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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTTCTTCTACCTTGGGTAACTCCGTCTCTCCGTTACTTTCTTCCTCCGATCGGTGGTTCAGTTCTCCAAAGTATCTAATCTACTCCTGTTGTTTCAGgtgcattgttgtgctctcttcacttggtttactttaaaaggcttcttcacttattttgcaaagttttgatttttagtggtttctctgttgtctcattaattctctcgatcttctcctttcaagtgttgacag

Basic information

species Arabidopsis thaliana
transcript AT3G11620.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060665|gb|DR356422.1|DR356422
EST:     GATCGGTGGTTCAGTTCTCCAAAGTATCTAATCTACTCCTGTTGTTTCAG                         TTCTGAGAGAAGATATAAGTTGAATCGCGTGACCGGAGACATGGAGACTCA
genomic: GATCGGTGGTTCAGTTCTCCAAAGTATCTAATCTACTCCTGTTGTTTCAGgtgcattgtt ... gtgttgacagTTCTGAGAGAAGATATAAGTTGAATCGCGTGACCGGAGACATGGAGACTCA
EST: gi|19876798|gb|AU237629.1|AU237629
EST:     GATCGGTGGTTCAGTTCTCCAAAGTATCTAATCTACTCCTGTTGTTTCAG                         TTCTGAGAGAAGATATAAGTTGAATCGCGTGACCGGAGACATGGAGACTCA
genomic: GATCGGTGGTTCAGTTCTCCAAAGTATCTAATCTACTCCTGTTGTTTCAGgtgcattgtt ... gtgttgacagTTCTGAGAGAAGATATAAGTTGAATCGCGTGACCGGAGACATGGAGACTCA
EST: gi|86060664|gb|DR356421.1|DR356421
EST:     GATCGGTGGTTCAGTTCTCCAAAGTATCTAATCTACTCCTGTTGTTTCAG                         TTCTGAGAGAAGATATAAGTTGAATCGCGTGACCGGAGACATGGAGACTCA
genomic: GATCGGTGGTTCAGTTCTCCAAAGTATCTAATCTACTCCTGTTGTTTCAGgtgcattgtt ... gtgttgacagTTCTGAGAGAAGATATAAGTTGAATCGCGTGACCGGAGACATGGAGACTCA
EST: gi|86060666|gb|DR356423.1|DR356423
EST:     GATCGGTGGTTCAGTTCTCCAAAGTATCTAATCTACTCCTGTTGTTTCAG                         TTCTGAGAGAAGATATAAGTTGAATCGCGTGACCGGAGACATGGAGACTCA
genomic: GATCGGTGGTTCAGTTCTCCAAAGTATCTAATCTACTCCTGTTGTTTCAGgtgcattgtt ... gtgttgacagTTCTGAGAGAAGATATAAGTTGAATCGCGTGACCGGAGACATGGAGACTCA