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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTACAATAATGCTCTTGAGCAGCTTGATCAAGCTGTGAACAAGGGAGATGCTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAGgtgtgtttgtgtgtctgactctcttttttttttttttttacgatctcgatttctatgtgtttgatcgattggtttgtgtttagatcgtgtttggatgata...

Basic information

species Arabidopsis thaliana
transcript AT3G10920.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10920.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os05g25850.1 (Oryza sativa), 5'ss of exon 1
AATTACAATAATGCTCTTGAGCAGCTTGATCAAGCTGTGAACAAGGGAGATGCTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAGgtgtgtttgtgtgtctgactctcttttttttttttttttacgatctcgatttctatgtgtttgatcgattggtttgt-gtttagatcgtgtttggatgata
|| ||||| || || || |||||||| ||    || ||   |||||| || ||  || |  | ||  |  | |||||||||||||| |||||||||||||||| |     ||  |   | |  |     ||  |    ||||   |   ||||| | | |||  |||    |||  | |        | |   ||  |   
AACTACAACAAGGCCCTCGAGCAGCTCGACGCCGCCGTCGCCAAGGGCGACGCCCCCGCCATCGTGCACCTCCAGAGCGCCATCAAGTTCAACGGCGGAGgtgaggccaagtcccgccccccttaccccttcctcgcatacggctttc-tttctttctttttcttcgtcctgttcatcgcgggcgatgcgggcggcggggg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125195156|gb|EL210110.1|EL210110
EST:     CTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAG                         GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT
genomic: CTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAGgtgtgtttgt ... taacgtgcagGTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT
EST: gi|301501665|gb|HO207205.1|HO207205
EST:     TGCTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAG                         GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT
genomic: TGCTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAGgtgtgtttgt ... taacgtgcagGTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT
EST: gi|301501762|gb|HO207302.1|HO207302
EST:     TGCTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAG                         GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT
genomic: TGCTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAGgtgtgtttgt ... taacgtgcagGTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT
EST: gi|125213955|gb|EL228679.1|EL228679
EST:     CTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAG                         GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT
genomic: CTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAGgtgtgtttgt ... taacgtgcagGTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT
EST: gi|116426619|gb|EG469211.1|EG469211
EST:     TGCTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAG                         GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT
genomic: TGCTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAGgtgtgtttgt ... taacgtgcagGTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT
EST: gi|47828007|gb|CK117691.1|CK117691
EST:     TGCTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAG                         GTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT
genomic: TGCTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAGgtgtgtttgt ... taacgtgcagGTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCAGT
EST: gi|164089583|gb|EL994184.1|EL994184
EST:     TGCTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAG                         GTCATGTCAAC
genomic: TGCTTCCACTGTTGTTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAGgtgtgtttgt ... taacgtgcagGTCATGTCAAC
EST: gi|152034351|gb|BP825996.2|BP825996
EST:     GCTTCCACTGTTGGTTAAGTTGCAGAGCGCCATCAAATTCAACGGGGGAG                         GTCATGTCAAACATTCGATTTTCTGGAAGAACCTTGCTCCTTCCA
genomic: GCTTCCACTGTTG-TTAAGTTGCAGAGCGCCATCAAATTCAACGGCGGAGgtgtgtttgt ... taacgtgcagGTCATGTCAACCATTCGATTTTCTGGAAGAACCTTGCTCCTTCCA