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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGATACAGCTAGTGTTCCGGAGGAGAAGGACGATCGATCTAAGGAGACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccattttgatatcctacttcaatttcgttgcttcttaatctgactcggttcatcatcagtttaggattctttcttcgtaaaaaaaaaacag

Basic information

species Arabidopsis thaliana
transcript AT3G10850.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876010|gb|AU236841.1|AU236841
EST:     ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCT                         GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: gi|86023772|gb|DR319525.1|DR319525
EST:     ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCT                         GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: gi|152038306|gb|BP813348.2|BP813348
EST:     ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCT                         GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: gi|86023773|gb|DR319526.1|DR319526
EST:     ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCT                         GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: gi|152035101|gb|BP844575.2|BP844575
EST:     ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCT                         GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: gi|86027937|gb|DR323690.1|DR323690
EST:     ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCT                         GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: gi|152035013|gb|BP842123.2|BP842123
EST:     ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCT                         GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: gi|86023775|gb|DR319528.1|DR319528
EST:     ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGA-AACTACTCTTATCT                         GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: gi|86023774|gb|DR319527.1|DR319527
EST:     CGATGAAGATCTTCCACGTTCCTTGTCTGCAAGA-AACTTACTCTTATCT                         GATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
genomic: CGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAAC-TACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC
EST: gi|152034408|gb|BP827689.2|BP827689
EST:     ACGATGAAGATCTT-CACGTTCCTTGTCTGCAAGACAACTACTCTTATCT                         GATAATCGATGAGAGCGCCGGAGACGCGGGGGTTGTGGATCCAGTTGATCC
genomic: ACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccatt ... aaaaaaacagGATAATCGATGAGAGCACCGGAGACGCGGCGGTTGTGGATCCAGTTGATCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGATACAGCTAGTGTTCCGGAGGAGAAGGACGATCGATCTAAGGAGACGATGAAGATCTTCCACGTTCCTTGTCTGCAAGACAACTACTCTTATCTgtgagccattttgatatcctacttcaatttcgttgcttcttaatctgactcggttcatcatcagtttaggattctttcttcgtaaaaaaaaaacag

- - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA