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TACCTTTTCTTCTTCGTCTTCTCCATTTTCTCGAGATTTAGCTTTTCTCTTCGTGATCGGGAACGTGTTGATCAGATTCTAGCGTGGATTCGTATCCCAGgtaagattcgcagctgaaatcgaatttgtttctcgatattcttttctctctagatctacttccagacgtagtgtttgattaatttttgtatacgccgata...
species | Arabidopsis thaliana |
transcript | AT3G10380.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGTGATCGGGAACGTGTTGATCAGATTCTAGCGTGGATTCGTATCCCAG CTACAGAGAGCTTTGATTGGAATGTGCTGAGGAACATTCATTTCGGCTCTAEST: gi|19878577|gb|AU239408.1|AU239408
genomic: TCGTGATCGGGAACGTGTTGATCAGATTCTAGCGTGGATTCGTATCCCAGgtaagattcg ... ttgctttcagCTACAGAGAGCTTTGATTGGAATGTGCTGAGGAACATTCATTTCGGCTCTA
EST: TCGTGATCGGGAACGTGTTGATCAGATTCTAGCGTGGATTCGTATCCCAG CTACAGAGAGCTTTGATTGGAATGTGCTGAGGAACATTCATTTCGGCTCTAEST: gi|152038538|gb|AV827915.2|AV827915
genomic: TCGTGATCGGGAACGTGTTGATCAGATTCTAGCGTGGATTCGTATCCCAGgtaagattcg ... ttgctttcagCTACAGAGAGCTTTGATTGGAATGTGCTGAGGAACATTCATTTCGGCTCTA
EST: TCGTGATCGGGAACGTGTTGATCAGATTCTAGCGTGGATTCGTATCCCAG CTACAGAGAGCTTTGATTGGAATGTGCTGAGGAACATTCATTTCGGCTCTAEST: gi|116414055|gb|EG456647.1|EG456647
genomic: TCGTGATCGGGAACGTGTTGATCAGATTCTAGCGTGGATTCGTATCCCAGgtaagattcg ... ttgctttcagCTACAGAGAGCTTTGATTGGAATGTGCTGAGGAACATTCATTTCGGCTCTA
EST: TCGTGATCGGGAACGTGTTGATCAGATTCTAGCGTGGATTCGTATCCCAG CTACAGAGAGCTTTGATTGGAATGTGCTGAGGAACATTCATTTCGGCTCTA
genomic: TCGTGATCGGGAACGTGTTGATCAGATTCTAGCGTGGATTCGTATCCCAGgtaagattcg ... ttgctttcagCTACAGAGAGCTTTGATTGGAATGTGCTGAGGAACATTCATTTCGGCTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCTTTTCTTCTTCGTCTTCTCCATTTTCTCGAGATTTAGCTTTTCTCTTCGTGATCGGGAACGTGTTGATCAGATTCTAGCGTGGATTCGTATCCCAGgtaagattcgcagctgaaatcgaatttgtttctcgatattcttttctctctagatctacttccagacgtagtgtttgattaatttttgtatacgccgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatcgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctag