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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGCTGCTTCTTTAGCTGTGAGATTCGCCAACAATGGACACCCAACTCTGGTTGTATCTACAGATCCAGCACATTCCTTGAGCGATTCTTTTGCTCAGgtaaacgaagaaattctataaaaaggtgaagactttgtttttgtttgatgaagatatacatatgattggtgtttctattgtttttgttgattttgtag

Basic information

species Arabidopsis thaliana
transcript AT3G10350.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10350.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA10G35320.1 (Glycine max), 5'ss of exon 2
TTGTGCTGCTTCTTTAGCTGTGAGATTCGCCAACAATGGACACCCAACTCTGGTTGTATCTACAGATCCAGCACATTCCTTGAGCGATTCTTTTGCTCAGgtaaacgaagaaatt--ctataaaaaggtgaagactttgtttttgtttgatgaagatatacatatgattggtgtttctattgtttttgttgattttgtag
||||||||||||  | ||||| | ||| ||||| ||||||||||| ||||| || || || || |||||||| ||||| ||||| ||||||||||||||||| ||  |      |  |  || |    ||| ||   | |   || | ||| | | | |   ||  |   || || | | |  |  | | |         
TTGTGCTGCTTCGCTTGCTGTTAAATTTGCCAATAATGGACACCCCACTCTCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaattacatgtgtagccttatagttctgatgatgct-tgcatggtggattatgctctgtgtaacacaagttttgcaaattgtactctag---------

upper sequence: AT3G10350.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA20G32200.1 (Glycine max), 5'ss of exon 2
TTGTGCTGCTTCTTTAGCTGTGAGATTCGCCAACAATGGACACCCAACTCTGGTTGTATCTACAGATCCAGCACATTCCTTGAGCGATTCTTTTGCTCAGgtaaacgaagaaatt--ctataaaaaggtgaagactttgtttttgtttgatgaagatatacatatgattggtgtttctattgtttttgttgattttgtag
 |||||||||||  | ||||| | ||| ||||| ||||||||||| ||||| || || || || |||||||| ||||| ||||| ||||||||||||||||| ||| |      |  |  || |    ||| ||   | |   |||| ||| | | | |   ||  |   |  || | | |  |  | | |         
CTGTGCTGCTTCACTTGCTGTTAAATTTGCCAATAATGGACACCCTACTCTCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGgttaactacatgtgtagccttatagttctgatgatgct-tgcatgttggattatgctctgtgtaacacaagctttgcaaattgtactatag---------