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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCATTTCATTTTCAATAGTAATCTCGATTACTGATTCGTCGTTTCTTCCGCCGTGTTTTGATTTTTCTCGGATTCTCCGCTCAGAGTTCCTAATCTGTgtaagttgatttcgattttccgactctgagatttttaaatgtttggttcgtgggctatcatcgtatctcgttgtatctttccaacaatttgaaagctgtt...

Basic information

species Arabidopsis thaliana
transcript AT3G09560.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116431079|gb|EG473671.1|EG473671
EST:     CGCCGTGTTTTGATTTTTCTCGGATTCTCCGCTCAGAGTTCCTAATCTGT                         GCTGGAATTAACCTGTCTAAGAAACTAAACTTTCTCTAGTTTCTAGATTTT
genomic: CGCCGTGTTTTGATTTTTCTCGGATTCTCCGCTCAGAGTTCCTAATCTGTgtaagttgat ... tcacctgtagGCTGGAATTAACCTGTCTAAGAAACTAAACTTTCTCTAGTTTCTAGATTTT
EST: gi|116396576|gb|EG439168.1|EG439168
EST:     CGCCGTGTTTTGATTTTTCTCGGATTCTCCGCTCAGAGTTCCTAATCTGT                         GCTGGAATTAACCTGTCTAAGAAACTAAACTTTCTCTAGTTTCTAGATTTT
genomic: CGCCGTGTTTTGATTTTTCTCGGATTCTCCGCTCAGAGTTCCTAATCTGTgtaagttgat ... tcacctgtagGCTGGAATTAACCTGTCTAAGAAACTAAACTTTCTCTAGTTTCTAGATTTT