Sequence
atgc intronic sequence ATGC exonic sequenceTGGGTGCCTCCACGATCTCCATGTAATCTGCTTCAAGAAGATCATTGGCATGATCCATGGCGGGTGCTGGTCATATGTATGCTTCTCAACAAAACATCTGgtgcacaggtttttcctcatttctatctctttttattccatatctttggtgaacataagtaattagcatttgagaccaattagtttaagtggatgtgttt...
Basic information
species | Arabidopsis thaliana |
transcript | AT3G07930.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G07930.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv00s0201g00070.t01 (Vitis vinifera), 5'ss of exon 1
TGGGTGCCTCCACGATCTCCATGTAATCTGCTTCAAGAAGATCATTGGCATGATCCATGGCGGGTGCTGGTCATATGTATGCTTCTCAACAAAACATCTGgtgcacaggtttttcctcatttctatctctttttattccatatctttggtgaacataagtaattagcatttgagaccaattagtttaagtggatgtgttt-----------
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--------TCCACCCTCCCATTTCCATCTCCTTCAAGAAGATCATTACCATGATCCTTGGAGGGTCATGGTCATATGCATGCTCCTTAACTGCACTTCTGGTCTCCAGgtaattttttgggcgt-cttgtttttcttttatttttactataagtatttgtttctaatattccaga--gaatatgttatattgatgaatttgaagacaacttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86079635|gb|DR375392.1|DR375392EST: TGATCCATGGCGGGTGCTGGTCATATGTATGCTTCTCAACAAAACATCTG ACGCGGGGAGTGATATCAGACTTGTTTGGATTGTGTACTGATGCAAAGACT
genomic: TGATCCATGGCGGGTGCTGGTCATATGTATGCTTCTCAACAAAACATCTGgtgcacaggt ... gtgattgcagACGCGGGGAGTGATATCAGACTTGTTTGGATTGTGTACTGATGCAAAGACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGGTGCCTCCACGATCTCCATGTAATCTGCTTCAAGAAGATCATTGGCATGATCCATGGCGGGTGCTGGTCATATGTATGCTTCTCAACAAAACATCTGgtgcacaggtttttcctcatttctatctctttttattccatatctttggtgaacataagtaattagcatttgagaccaattagtttaagtggatgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaccaa