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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAGGCGTGGCTTCCGCCATGGCGGAGCGGTTAAAGGAAGACGGAAACAATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggttctcactctccttctctcaatttcatcgttagggttttgtgttttccgagattttgattgagatctgcgtagagtaataaacccttgatta...

Basic information

species Arabidopsis thaliana
transcript AT3G07370.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86048653|gb|DR344408.1|DR344408
EST:     ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAG                         GCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
genomic: ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggtt ... aattgagtagGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
EST: gi|86048650|gb|DR344405.1|DR344405
EST:     ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAG                         GCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
genomic: ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggtt ... aattgagtagGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
EST: gi|86048663|gb|DR344418.1|DR344418
EST:     ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAG                         GCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
genomic: ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggtt ... aattgagtagGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
EST: gi|86048652|gb|DR344407.1|DR344407
EST:     ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAG                         GCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
genomic: ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggtt ... aattgagtagGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
EST: gi|86048662|gb|DR344417.1|DR344417
EST:     ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAG                         GCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
genomic: ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggtt ... aattgagtagGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
EST: gi|86048659|gb|DR344414.1|DR344414
EST:     ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAG                         GCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
genomic: ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggtt ... aattgagtagGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
EST: gi|86048665|gb|DR344420.1|DR344420
EST:     ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAG                         GCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
genomic: ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggtt ... aattgagtagGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
EST: gi|86048657|gb|DR344412.1|DR344412
EST:     ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAG                         GCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
genomic: ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggtt ... aattgagtagGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
EST: gi|86048661|gb|DR344416.1|DR344416
EST:     ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAG                         GCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
genomic: ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggtt ... aattgagtagGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
EST: gi|86048649|gb|DR344404.1|DR344404
EST:     ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAG                         GCAATAGCTTT
genomic: ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggtt ... aattgagtagGCAATAGCTTT
EST: gi|86048658|gb|DR344413.1|DR344413
EST:     ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAG                         GCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
genomic: ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggtt ... aattgagtagGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
EST: gi|86048660|gb|DR344415.1|DR344415
EST:     ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAG                         GCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
genomic: ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggtt ... aattgagtagGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
EST: gi|86048664|gb|DR344419.1|DR344419
EST:     ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAG                         GCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
genomic: ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggtt ... aattgagtagGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
EST: gi|86048648|gb|DR344403.1|DR344403
EST:     ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAG                         GCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
genomic: ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggtt ... aattgagtagGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
EST: gi|86048654|gb|DR344409.1|DR344409
EST:     ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAG                         GCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
genomic: ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggtt ... aattgagtagGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
EST: gi|86048656|gb|DR344411.1|DR344411
EST:     ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAG                         GCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
genomic: ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggtt ... aattgagtagGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
EST: gi|86048655|gb|DR344410.1|DR344410
EST:     ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAG                         GCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT
genomic: ATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggtt ... aattgagtagGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACAGGCGTGGCTTCCGCCATGGCGGAGCGGTTAAAGGAAGACGGAAACAATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGgtacatggttctcactctccttctctcaatttcatcgttagggttttgtgttttccgagattttgattgagatctgcgtagagtaataaacccttgatta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaacc