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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACATGAGGTTTCTCCGTAAGCGTATGAACACTAAACCTTCTCACGGACCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttacttcgatctctctctggttttgttatttttagctactgattcgagcaccgattttatgaatttagtactgtgaataatgtagaaagcgcata...

Basic information

species Arabidopsis thaliana
transcript AT3G07110.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G07110.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA16G13580.1 (Glycine max), 5'ss of exon 1
AGTACATGAGGTTTCTCCGTAAGCGTATGAACACTAAACCTTCTCACGGACCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttacttcgatctct-ctctggttttgttatttttagctactgat-tcgagcaccgattttatgaatttagtactgtgaataatgtagaaagcgcata
||||| ||||||| ||||| || || |||||||| || ||||| ||||| || || |||||||| || |||||||||||||||||||| |||||||| ||||  |||  |    ||| |  |||  ||||  | | |     |||| || |  | ||  | | || |   |||     |||   |   ||    |    |  
AGTACTTGAGGTTCCTCCGCAAACGCATGAACACCAAGCCTTCCCACGGCCCCATCCACTTCCGCGCACCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtttttcttttctttgttctttttttcctttctcacaatacttatatataacaatgttgttgtttttttt-cgttgttgttctcgttcgtaatttag-

upper sequence: AT3G07110.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA09G02790.1 (Glycine max), 5'ss of exon 1
AGTACATGAGGTTTCTCCGTAAGCGTATGAACACTAAACCTTCTCACGGACCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttacttcgatctctctctggttttgttatttttagctactgattcgagcaccgattttatgaatttagtactgtgaataat-gtagaaagcgcata-
| ||| ||||||| || || || || |||||||| ||||| || || || || || ||||||||||| |||||||||||||||||||| |||||||| ||||  || | | |   || | | |  ||||  | |  ||   |    | |  |  ||   ||  |  |     ||  | | | |  | || |   |    |  
AATACTTGAGGTTCCTTCGCAAACGCATGAACACCAAACCCTCCCATGGCCCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcattactcactttttttttttttactttaattccttttaaagtttataact--ttccaacacaagcgtgttttaatttgtcgtggggtgtttttgt

upper sequence: AT3G07110.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA08G46860.1 (Glycine max), 5'ss of exon 1
AGTACATGAGGTTTCTCCGTAAGCGTATGAACACTAAACCTTCTCACGGACCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttacttcgatctctctctggttttgttatttttagctactgattcgagcaccgattttatgaatttagtac-tgtgaataatgtagaaagcgcata
||||| || | || ||||| ||||| |||||||| || || |||||||| || || || |||||||| |||  ||||||||||||||| |||||||| ||||  || |||   | |  | |||   | |   |     |   | | |||  ||     ||  |   ||||  || | | | | |      | |   | | |
AGTACTTGCGTTTCCTCCGCAAGCGCATGAACACCAAGCCCTCTCACGGCCCCATCCATTTCCGTGCACCCGGCAAGATCTTCTGGCGCACCGTTCGTGGgtcagt-actgtcacccttttctttctctaaaaaaaacattaatttattgaagatattatcgttgcaattgggttcatttaagtgtctctgtataggtaga

upper sequence: AT3G07110.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA08G46850.1 (Glycine max), 5'ss of exon 1
AGTACATGAGGTTTCTCCGTAAGCGTATGAACACTAAACCTTCTCACGGACCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttacttcgatctctctctggttttgttatttt--tagctactgattcgagcaccgattttatgaatttagtac-tgtgaataatgtagaaagcgcata
||||| || | || ||||| ||||| |||||||| || || |||||||| || || || |||||||| |||  ||||||||||||||| |||||||| ||||  |     ||   || |   |  |      |       |   | |||||  ||     || || | ||||  || | | | |||      | |   | |  
AGTACTTGCGTTTCCTCCGCAAGCGCATGAACACCAAGCCCTCTCACGGCCCCATCCATTTCCGTGCACCCGGCAAGATCTTCTGGCGCACCGTTCGTGGgtcagcactctcacccttttctttctccccccaaaaaaacattaattgattaaagatattatctt-tcaattgggttcatttaaatgtctctgtataggta--

upper sequence: AT3G07110.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA15G13670.1 (Glycine max), 5'ss of exon 1
AGTACATGAGGTTTCTCCGTAAGCGTATGAACACTAAACCTTCTCACGGACCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttacttcgatctctctctggttttgttatttttagctactgattcgagcaccgatttt--atgaatttagtactgtgaataatgtagaaagcgcata-----------
| ||| |||| || ||||| || || |||||||| ||||| || || || ||||| |||||||| || ||  |||||||||||||||| |||||||| ||||  ||   |    | |   | |  || | | || |   | ||   |  | ||  |   || |  |  | ||  | ||| |   |  | ||    |    |            
AATACTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgtcactttttgttattattatttcatctcatg-tataaaacctagttcaatttcttaaaaagttgggaactttttgtgttttaatctgttgttgggtttttgtag

upper sequence: AT3G07110.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv07s0005g06490.t01 (Vitis vinifera), 5'ss of exon 1
AGTACATGAGGTTTCTCCGTAAGCGTATGAACACTAAACCTTCTCACGGACCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttacttcgatctctctctggttttgttatttttagctactgattcgagcaccgattttatgaatttagtactgtgaataatgtagaaagcgcata--------
||||| ||||||| ||||| ||||| |||||||| || || ||||| || || || |||||||| || |||||||||||| ||||||||||| | || ||||  |||| |   || | | ||||   ||||  || | ||  |   ||  |||   |     | ||    |  |  |   ||| || || |    |  |         
AGTACCTGAGGTTCCTCCGCAAGCGCATGAACACCAAGCCCTCTCATGGGCCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGGgtgagttatt--aatatttttctg---ttgtccttatcag--aaaaatgagagtgtcatgggtctggccctcctggttcaaatgatcta-atgctgtttggtttttct

upper sequence: AT3G07110.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv05s0029g00020.t01 (Vitis vinifera), 5'ss of exon 1
AGTACATGAGGTTTCTCCGTAAGCGTATGAACACTAAACCTTCTCACGGACCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgtt--actt------cgatctctctctggttttgttatttttagctactga--ttcgagcaccgattttatgaatttagtactgtgaataatgtagaaagcgcata-----------------------------
||||  |  | || ||||| ||||| |||||||| || ||||| || || || || |||||||| ||||||||||||||| ||||| | ||| | |||||||  | |  ||||        || | | ||||  |||  ||||    |  ||  |  ||    ||    ||| ||  ||||| || | |||    |  |   |||  |||                             
AGTATCTTCGCTTCCTCCGCAAGCGCATGAACACCAAGCCTTCCCATGGCCCAATCCACTTCCGCGCTCCCTCCAAGATCCTCTGGAGGACCATACGCGGgtgagcttgacttatcattttatatttttctgcattttctattccacgaaacgaagtttttttcattattttcatttatttattaatatgatgctttgattgagccaataaaatcccaaaatctctttctggtttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164145467|gb|ES046407.1|ES046407
EST:     GGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: GGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|116476045|gb|EG518637.1|EG518637
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|86071403|gb|DR367160.1|DR367160
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|86071400|gb|DR367157.1|DR367157
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|125030007|gb|EL102276.1|EL102276
EST:     CTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTACCCGCTTGAA
genomic: CTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|116476054|gb|EG518646.1|EG518646
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|47830930|gb|CK120614.1|CK120614
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|86071402|gb|DR367159.1|DR367159
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|164050239|gb|ES071405.1|ES071405
EST:     TCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: TCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|164015052|gb|ES195831.1|ES195831
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCA
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCA
EST: gi|47828463|gb|CK118147.1|CK118147
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|125255044|gb|EL269129.1|EL269129
EST:     CGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: CGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|125048029|gb|EL120298.1|EL120298
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCC
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCC
EST: gi|47832308|gb|CK121992.1|CK121992
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|116476052|gb|EG518644.1|EG518644
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|116476053|gb|EG518645.1|EG518645
EST:     TTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: TTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|86071404|gb|DR367161.1|DR367161
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|125313020|gb|EL327105.1|EL327105
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGA
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGA
EST: gi|116447425|gb|EG490017.1|EG490017
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|116476043|gb|EG518635.1|EG518635
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|47828023|gb|CK117707.1|CK117707
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|47832259|gb|CK121943.1|CK121943
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|124927244|gb|EL004999.1|EL004999
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAA
EST: gi|125308477|gb|EL322562.1|EL322562
EST:     CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGG                         TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGC
genomic: CCTATTCACTTCCGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGgttcgttact ... tgtgtggcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGC