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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCGTATCGAAAATCTTCTTCGGGTCAGACGATCTGAAGCCGATCGCTGTAGAATCAGTTTCGTGCTCCGCAGTTTCTCGAGTTTCCTCTCACTTCAGgtagtcttcgacaccctaatcatgttagattgatattaatgttgaattttagctgatattcaatggttattgatccag

Basic information

species Arabidopsis thaliana
transcript AT3G07100.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116431684|gb|EG474276.1|EG474276
EST:     GTAGAATCAGTTTCGTGCTCCGCAGTTTCTCGAGTTTCCTCTCACTTCAG                         ATCTTCATAAGAGAATTCACTTACGGAGAGGGACTTTTTCGTAGACGATTC
genomic: GTAGAATCAGTTTCGTGCTCCGCAGTTTCTCGAGTTTCCTCTCACTTCAGgtagtcttcg ... attgatccagATCTTCATAAGAGAATTCACTTACGGAGAGGGACTTTTTCGTAGACGATTC
EST: gi|116411238|gb|EG453830.1|EG453830
EST:     GTAGAATCAGTTTCGTGCTCCGTAGTTTCTCGAGTTTCCTCTCACTTCAG                         ATCTTCATAAGAGAATTCACTTACGGAGAGGGACTTTTTCGTAGACGATTC
genomic: GTAGAATCAGTTTCGTGCTCCGCAGTTTCTCGAGTTTCCTCTCACTTCAGgtagtcttcg ... attgatccagATCTTCATAAGAGAATTCACTTACGGAGAGGGACTTTTTCGTAGACGATTC
EST: gi|116411237|gb|EG453829.1|EG453829
EST:     GTAGAATCAGTTTCGTGCTCCGTAGTTTCTCGAGTTTCCTCTCACTTCAG                         ATCTTCATAAGAGAATTCACTTACGGAGAGGGACTTTTTCGTAGACGATTC
genomic: GTAGAATCAGTTTCGTGCTCCGCAGTTTCTCGAGTTTCCTCTCACTTCAGgtagtcttcg ... attgatccagATCTTCATAAGAGAATTCACTTACGGAGAGGGACTTTTTCGTAGACGATTC