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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCCACTGTGGTCTGTGGGGTGATTTAAATTCCATCTAGGGTTTTGACTATTGTGTATGTCACCTATCTTTCCTCTCGCGTCTCTCCCCTTTACTCAGgttagctgcttatatccggctgatcgctggatataatttgacttttaactcttctcgtttgtttcgttggtgattgagtttgaaaagttgtgttgtgccgttgttacag

Basic information

species Arabidopsis thaliana
transcript AT3G06680.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164019424|gb|ES108560.1|ES108560
EST:     GTCACCTATCTTTCCTCTCGCGTCTCTCCCCTTTACTCAG                         AAATGGCGAAATCGAAGAATCACACGGCGCACAATCAGTC
genomic: GTCACCTATCTTTCCTCTCGCGTCTCTCCCCTTTACTCAGgttagctgct ... gttgttacagAAATGGCGAAATCGAAGAATCACACGGCGCACAATCAGTC
EST: gi|86078453|gb|DR374210.1|DR374210
EST:     ACCTATCTTTCCTCTCGCGTCTCTCCCCTTTACTCAG                         AAATGGCGAAATCGAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGC
genomic: ACCTATCTTTCCTCTCGCGTCTCTCCCCTTTACTCAGgttagctgct ... gttgttacagAAATGGCGAAATCGAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGC
EST: gi|164182526|gb|ES127859.1|ES127859
EST:     TGTCACCTATCTTTCCTCTCGCGTCTCTCCCCTTTACTCAG                         AAATGGCGAAATCGAAGAATCACACGGCGCAC
genomic: TGTCACCTATCTTTCCTCTCGCGTCTCTCCCCTTTACTCAGgttagctgct ... gttgttacagAAATGGCGAAATCGAAGAATCACACGGCGCAC
EST: gi|125165114|gb|EL191543.1|EL191543
EST:     ACCTANCTTTCCTCTCGCGTCTCTCCCCTTTACTCAG                         AAATGGCGAAATCGAAGAATCACACGGCGCACAATCAGT
genomic: ACCTATCTTTCCTCTCGCGTCTCTCCCCTTTACTCAGgttagctgct ... gttgttacagAAATGGCGAAATCGAAGAATCACACGGCGCACAATCAGT
EST: gi|164158131|gb|ES107672.1|ES107672
EST:     TGTCACCTATCTTTCCTCTCGCGTCTCTCCCCTTTAACTCAG                         AAATGGCGAAATCGAAGAATCACACGGCGC
genomic: TGTCACCTATCTTTCCTCTCGCGTCTCTCCCCTTTA-CTCAGgttagctgct ... gttgttacagAAATGGCGAAATCGAAGAATCACACGGCGC
EST: gi|164096352|gb|ES200129.1|ES200129
EST:     TGTCACCTATCTTTCCTCTCGCGTCTCTCCCCTTTACTCAG                         AAATGGCGAAATCGAAGAATCACACGGCGC
genomic: TGTCACCTATCTTTCCTCTCGCGTCTCTCCCCTTTACTCAGgttagctgct ... gttgttacagAAATGGCGAAATCGAAGAATCACACGGCGC
EST: gi|152034411|gb|BP827764.2|BP827764
EST:     TCACCTATCTTT-CTCTCGCGTCTCTCCCCTTTACTCAG                         AAATGGCGAAATCGAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGC
genomic: TCACCTATCTTTCCTCTCGCGTCTCTCCCCTTTACTCAGgttagctgct ... gttgttacagAAATGGCGAAATCGAAGAATCACACGGCGCACAATCAGTCTGCCAAGGCGC
EST: gi|164067799|gb|ES216358.1|ES216358
EST:     GTCACCTATCTTTCCTCTCGCGTCTCTCCCCTTTACTCAG                         AAATGGCGAAATCGAAGAATCACACGGCGCA
genomic: GTCACCTATCTTTCCTCTCGCGTCTCTCCCCTTTACTCAGgttagctgct ... gttgttacagAAATGGCGAAATCGAAGAATCACACGGCGCA