1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTGTCCAAGTTGTCTAATCGGAGATCTTACATTATGATTGCCTATTATGGTTTTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGTTGCCTTCAGgtttgttaaagttctcttctttacttcgattcatttcacaagtaactcatacctatgttgcgtgtaaagagatcagaacttagattgaagaagaatgctt...
species | Arabidopsis thaliana |
transcript | AT3G05010.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTTTTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGTTGCCTTCAG GCATGGGAATGCACTCCGGGGAAAGAAGTTTATTTGGAATTTGTTAEST: gi|125302565|gb|EL316650.1|EL316650
genomic: GTTTTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGTTGCCTTCAGgtttgttaaa ... atgagtttagGCATGGGAATGCACTCCGGGGAAAGAAGTT-ATTTGGAATTTGTTA
EST: GTTTTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGTTGCCTTCAG GCATGGGAATGCACTCCGGGGAAA
genomic: GTTTTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGTTGCCTTCAGgtttgttaaa ... atgagtttagGCATGGGAATGCACTCCGGGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGTCCAAGTTGTCTAATCGGAGATCTTACATTATGATTGCCTATTATGGTTTTCTTTGGCTTGTTAGCTTGCTCAATCTTGCTTGGTGTTGCCTTCAGgtttgttaaagttctcttctttacttcgattcatttcacaagtaactcatacctatgttgcgtgtaaagagatcagaacttagattgaagaagaatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaag