1 5' 3' | 2 5' 3' | 3 5' 3' |
TGGCGATGTACAGTGGCCGATTCTATGCTAACAAGCCGGAACTCGCCGCTCGGAGGATCGAGGCCATTGGTTATCAGGTCGGCCACCAGCTCTCCGAGAGgtttgttttacacttgatcatcgtcttctttcgatctggttgatcattgtatctctaggttgctagtattagttgtagatctgaagatgatggcgaatgt...
species | Arabidopsis thaliana |
transcript | AT3G05000.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGCCACCAGCTCTCCGAGAG GTACACTATGGAAAGACCAAGGTTCAGTGACCATCTAGAGGCAATCAAGTTEST: gi|86086179|gb|DR381938.1|DR381938
genomic: CGGCCACCAGCTCTCCGAGAGgtttgtttta ... atgtcgttagGTACACTATGGAAAGACCAAGGTTCAGTGACCATCTAGAGGCAATCAAGTT
EST: CGGAGGATCGAGGCCATTGGTTATCAGGTCGGCCACCAGCTCTCCGAGAG GTACACTATGGAAAGACCAAGGTTCAGTGACCATCTAGAGGCAATCAAGTTEST: gi|125249410|gb|EL263495.1|EL263495
genomic: CGGAGGATCGAGGCCATTGGTTATCAGGTCGGCCACCAGCTCTCCGAGAGgtttgtttta ... atgtcgttagGTACACTATGGAAAGACCAAGGTTCAGTGACCATCTAGAGGCAATCAAGTT
EST: CGGAGGATCGAGGCCATTGGTTATCAGGTCGGCCACCAGCTCNCCGAGAG GTACACTATGGAAAG
genomic: CGGAGGATCGAGGCCATTGGTTATCAGGTCGGCCACCAGCTCTCCGAGAGgtttgtttta ... atgtcgttagGTACACTATGGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCGATGTACAGTGGCCGATTCTATGCTAACAAGCCGGAACTCGCCGCTCGGAGGATCGAGGCCATTGGTTATCAGGTCGGCCACCAGCTCTCCGAGAGgtttgttttacacttgatcatcgtcttctttcgatctggttgatcattgtatctctaggttgctagtattagttgtagatctgaagatgatggcgaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtcttct