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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATTGAAGAAGCGCCGTAGCAGCATTTTAGGTTAAAACTTATTGTTGATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttctctcagattattgtcctctcatttctactatctctgattcgtatcattaaagtatttgtcactgatctatgagtttgtttactgtag

Basic information

species Arabidopsis thaliana
transcript AT3G04840.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124920335|gb|EH994060.1|EH994060
EST:     CGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGC
genomic: CGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGC
EST: gi|125109858|gb|EL162100.1|EL162100
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAAT
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAAT
EST: gi|124962913|gb|EL037285.1|EL037285
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAATCTCTAAGGGTAGG
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATCTCTAAGGGTAGG
EST: gi|124786855|gb|EH876534.1|EH876534
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAATCTC
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATCTC
EST: gi|124765504|gb|EH855634.1|EH855634
EST:     GATTCTCCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAAT
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAAT
EST: gi|125015437|gb|EL087706.1|EL087706
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAA
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAA
EST: gi|164149530|gb|ES091006.1|ES091006
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAATCTCTAAGGG
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATCTCTAAGGG
EST: gi|164108796|gb|ES026437.1|ES026437
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAA-CAAGAGAATC
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATC
EST: gi|125261408|gb|EL275493.1|EL275493
EST:     CTATTCGTCGTCGACCTA-TTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGC
genomic: CTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGC
EST: gi|125229013|gb|EL243098.1|EL243098
EST:     CCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGC
genomic: CCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGC
EST: gi|125205515|gb|EL220469.1|EL220469
EST:     GATTCTTCTCTATTCGTCGTTGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAAT
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAAT
EST: gi|164076462|gb|ES133261.1|ES133261
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAATC
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATC
EST: gi|125117025|gb|EL166330.1|EL166330
EST:     GTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGCTGT
genomic: GTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGCTGT
EST: gi|164059336|gb|ES210671.1|ES210671
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAATC
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATC
EST: gi|116425121|gb|EG467713.1|EG467713
EST:     TATTCGTCGTCGACCTAGTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGC
genomic: TATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGC
EST: gi|164176346|gb|ES132724.1|ES132724
EST:     GCCATGGCCGTCGG                         GAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGC
genomic: GCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGC
EST: gi|164082096|gb|ES148081.1|ES148081
EST:     ATTCTTCTCTATTCGTCGTCGACCTAATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAATC
genomic: ATTCTTCTCTATTCGTCGTCGACCTA-TTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATC
EST: gi|86033517|gb|DR329270.1|DR329270
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGC
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGC
EST: gi|164164644|gb|ES178265.1|ES178265
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAATC
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATC
EST: gi|124723024|gb|EH814426.1|EH814426
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAATCTCTAAGGGTAGGAAGG
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATCTCTAAGGGTAGGAAGG
EST: gi|163977754|gb|ES135493.1|ES135493
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAATC
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATC
EST: gi|164022007|gb|ES192366.1|ES192366
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAA-CAAGAGAAT
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAAT
EST: gi|124704655|gb|EH796057.1|EH796057
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAG
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAG
EST: gi|125318080|gb|EL332165.1|EL332165
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAA
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAA
EST: gi|125279886|gb|EL293971.1|EL293971
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAAT
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAAT
EST: gi|125092739|gb|EL150562.1|EL150562
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAAT
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAAT
EST: gi|124866020|gb|EH950457.1|EH950457
EST:     CGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGC
genomic: CGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGGC
EST: gi|124833027|gb|EH917466.1|EH917466
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAAACAAGAGAAT
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAA-CAAGAGAAT
EST: gi|125262731|gb|EL276816.1|EL276816
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAAT
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAAT
EST: gi|86033515|gb|DR329268.1|DR329268
EST:     GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGA
genomic: GATTCTTCTCTATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGA
EST: gi|124944261|gb|EL020377.1|EL020377
EST:     ATTCTTCTCTAATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGG                         GAAAAACAAGAGAAT
genomic: ATTCTTCTCT-ATTCGTCGTCGACCTATTTTCCTCAGCCATGGCCGTCGGgtacttttct ... tttactgtagGAAAAACAAGAGAAT