1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
CTACAAACTTTGAAGGTATGAAAACAGTAGATGAAGCTGACGTGGGCATCTCCTGTTTTATCTCCCAGCTCCCTGGCTTCCGTGGAATCCTCAAACAAAGgtcgtgagatcagtttacgtttttatgcttcttcttatacacaaacgttcttgttccatataggagaaaaattgaaactttttttctgtatttatgtttcgtag
species | Arabidopsis thaliana |
transcript | AT3G04820.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCTGTTTTATCTCCCAGCTCCCTGGCTTCCGTGGAATCCTCAAACAAAG ATACGCAGACTTTATTGTTAATGAAGTAGATATGGGTGGTAATGTGGTTCAEST: gi|116431187|gb|EG473779.1|EG473779
genomic: TCCTGTTTTATCTCCCAGCTCCCTGGCTTCCGTGGAATCCTCAAACAAAGgtcgtgagat ... tgtttcgtagATACGCAGACTTTATTGTTAATGAAGTAGATATGGATGGTAATGTGGTTCA
EST: TCCTGTTTTATCTCCCAGCTCCCTGGCTTCCGTGGAATCCTCAAACAAAG ATACGCAGACTTTATTGTTAATGAAGTAGATATGGATGGTAATGTGGTTCAEST: gi|164098140|gb|EL988645.1|EL988645
genomic: TCCTGTTTTATCTCCCAGCTCCCTGGCTTCCGTGGAATCCTCAAACAAAGgtcgtgagat ... tgtttcgtagATACGCAGACTTTATTGTTAATGAAGTAGATATGGATGGTAATGTGGTTCA
EST: CTGTTTTATCTCCCAGCTCCCTGGCTTCCGTGGAATCCTCAAACAAAAGEST: gi|116421230|gb|EG463822.1|EG463822
genomic: CTGTTTTATCTCCCAGCTCCCTGGCTTCCGTGGAATCCTCAAACAAA-G
EST: TCCTGTTTTATCTCCCAGCTCCCTGGCTTCCGTGGAATCCTCAAACAAAG ATACGCAGACTTTATTGTTAATGAAGTAGATATGGATGGTAATGTGGTTCA
genomic: TCCTGTTTTATCTCCCAGCTCCCTGGCTTCCGTGGAATCCTCAAACAAAGgtcgtgagat ... tgtttcgtagATACGCAGACTTTATTGTTAATGAAGTAGATATGGATGGTAATGTGGTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACAAACTTTGAAGGTATGAAAACAGTAGATGAAGCTGACGTGGGCATCTCCTGTTTTATCTCCCAGCTCCCTGGCTTCCGTGGAATCCTCAAACAAAGgtcgtgagatcagtttacgtttttatgcttcttcttatacacaaacgttcttgttccatataggagaaaaattgaaactttttttctgtatttatgtttcgtag
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