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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGTACCGGCGCCTGTGGCATCCATTCCCGGAGCTACGGTCTATCCTCAGCCTGTTGGACCGGTTCCTGCCGTCTACGCTTACCCTCAGTACCAACAGgttagttggatttgaaaaatcaggagtttgattcgtggcgttgtgtatttatgattctgggttcgaattagggtttgcgaaatctctctcctttgatttt...

Basic information

species Arabidopsis thaliana
transcript AT3G04500.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125102981|gb|EL157545.1|EL157545
EST:     AGCCTGTTGGACCGGTTCCTGCCGTCTACGCTTACCCTCAGTACCAACAG                         GCACATCAATTGTTCCAAAGAGA
genomic: AGCCTGTTGGACCGGTTCCTGCCGTCTACGCTTACCCTCAGTACCAACAGgttagttgga ... ttattggcagGCACATCAATTGTTCCAAAGAGA
EST: gi|19878344|gb|AU239175.1|AU239175
EST:     AGCCTGTTGGACCGGTTCCTGCCGTCTACGCTTACCCTCAGTACCAACAG                         GCACATCAATTGTTCCAAAGAGATGCACAGACAATTACACCAGAAGCTCTT
genomic: AGCCTGTTGGACCGGTTCCTGCCGTCTACGCTTACCCTCAGTACCAACAGgttagttgga ... ttattggcagGCACATCAATTGTTCCAAAGAGATGCACAGACAATTACACCAGAAGCTCTT
EST: gi|47828762|gb|CK118446.1|CK118446
EST:     AGCCTGTTGGACCGGTTCCTGCCGTCTACGCTTACCCTCAGTACCAACAG                         GCACATCAATTGTTCCAAAGAGATGCACAGACAATTACACCAGAAGCTCTT
genomic: AGCCTGTTGGACCGGTTCCTGCCGTCTACGCTTACCCTCAGTACCAACAGgttagttgga ... ttattggcagGCACATCAATTGTTCCAAAGAGATGCACAGACAATTACACCAGAAGCTCTT
EST: gi|124817290|gb|EH902156.1|EH902156
EST:     AGCCTGTTGGACCGGTTCCTGCCGTCTACGCTTACCCTCAGTACCAACAG                         GCACATCAATTGTTC
genomic: AGCCTGTTGGACCGGTTCCTGCCGTCTACGCTTACCCTCAGTACCAACAGgttagttgga ... ttattggcagGCACATCAATTGTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCTGTACCGGCGCCTGTGGCATCCATTCCCGGAGCTACGGTCTATCCTCAGCCTGTTGGACCGGTTCCTGCCGTCTACGCTTACCCTCAGTACCAACAGgttagttggatttgaaaaatcaggagtttgattcgtggcgttgtgtatttatgattctgggttcgaattagggtttgcgaaatctctctcctttgatttt

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