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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTTAACACTCTGGGACCGCCAAGAATTTTCCTCTGCTAGAGAGAGTATAGTCAGGGCCGTTGTTACGAACCTGCACTTGCTTGATCTGCATATGCAGgtatgtcgttttttacttcatttaagctcggttagttgtgtacctttgtcttgaagctgtggcctatgatttctgaatcattctttttggaatttgttacgaag

Basic information

species Arabidopsis thaliana
transcript AT3G01780.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G01780.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv14s0171g00280.t01 (Vitis vinifera), 5'ss of exon 1
AATTTTAACACTCTGGGACCGCCAAGAATTTTCCTCTGCTAGAGAGAGTATAGTCAGGGCCGTTGTTACGAACCTGCACTTGCTTGATCTGCATATGCAGgtatgtcgttttttacttcatttaagctcggttagttgtgtacctttgtcttgaagctgtggcctatgatttctgaatcattctttttggaatttgttacgaag
 ||| | |||||||||||| | |||||||  || ||||||||||| || || ||  |||| |||||||| || || ||| | |||||||| |||||||| |||||    |  | |  |  |   |  |   |   |||| ||  ||       ||          |||  | | ||  |||  |||   | |     ||  |  
TATTCTTACACTCTGGGACAGGCAAGAATACTCTTCTGCTAGAGAAAGCATTGTTCGGGCTGTTGTTACAAATCTACACCTCCTTGATCTTCATATGCAAgtatgc--atcatcatcttttgctacttaaatctattgtttaaattgccggaaaactcaatatacatgtctgcggacacataatttagagtagcaaatagta--