Sequence
atgc intronic sequence ATGC exonic sequenceCGTCGAAGAGGAGCTCATCGACCTTTGCAAACGATTCGGCAAGATCGTCAATACCAAGAGCAATGTCGGCGCCAATCGCAATCAAGCTTTCGTCGAATTTgtgagcttaattgaaattgtttttgttcttacagtcccccaatttctagctcccgggatttggtttaggaaaggataaagagaaattggaattgcagcgc...
Basic information
species | Arabidopsis thaliana |
transcript | AT3G01150.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G01150.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os08g33830.1 (Oryza sativa), 5'ss of exon 1
CGTCGAAGAGGAGCTCATCGACCTTTGCAAACGATTCGGCAAGATCGTCAATACCAAGAGCAATGTCGGCGCCAATCGCAATCAAGCTTTCGTCGAATTTgtgagcttaattgaa---attgtttttgttcttacagtcccccaatttctagctcccgggatttggtttaggaaaggataaaga--gaaattggaattgcagcgc
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CACCGAGGAGGAGCTCGTCGAGCTCTGCAAGCCCTTCGGCAGGGTCGTCAACACCATGTGCAACGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCgtaaggacactcccctcccctccccccgattcctccctcctccgccccct-gcccccgccatctgatcgattacggatttacggctgcgtgtgcgatcgtc----
upper sequence: AT3G01150.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv14s0108g01030.t01 (Vitis vinifera), 5'ss of exon 1
CGTCGAAGAGGAGCTCATCGACCTTTGCAAACGATTCGGCAAGATCGTCAATACCAAGAGCAATGTCGGCGCCAATCGCAATCAAGCTTTCGTCGAATTTgtgag-cttaattgaaattgtttttgttcttacagtcccccaatttctagctcccgggatttggtttaggaaaggataaagagaaattggaattgcagcgc
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CACCGAGGAGGAGCTTGTGGAGCTCTGTAAACCCTTCGGCAAGATCGTCAACACCAAGTGCAATGTCGGCGCCAATCGCAACCAGGCCTTCGTGGAATTCgtgagtcccccccccttttttttttctttcttccgattccatccgtttgtttcaagatatatcttcatttattttattgaaaggggtttcttctagaaag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86061610|gb|DR357367.1|DR357367EST: ATACCAAGAGCAATGTCGGCGCCAATCGCAATCAAGCTTTCGTCGAATTT GCTGACTTGAATCAAGCTATATCAATGGTTTCGTATTATGCTTCATCTTCA
genomic: ATACCAAGAGCAATGTCGGCGCCAATCGCAATCAAGCTTTCGTCGAATTTgtgagcttaa ... gattttacagGCTGACTTGAATCAAGCTATATCAATGGTTTCGTATTATGCTTCATCTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGTCGAAGAGGAGCTCATCGACCTTTGCAAACGATTCGGCAAGATCGTCAATACCAAGAGCAATGTCGGCGCCAATCGCAATCAAGCTTTCGTCGAATTTgtgagcttaattgaaattgtttttgttcttacagtcccccaatttctagctcccgggatttggtttaggaaaggataaagagaaattggaattgcagcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT