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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGGTGAGACCGTCCTCAAAACCCCTTCGTCACCTTCAGTGTCTCTCTCTCAAGATCTAGCTCCGGTCATGAAGTCGTCGGAATTCCAATACCACGAGgttctctctctctctccctctctctgcttagagattttagatgtagtagtaatagtttaacaggagagtgaagatgtcaagaggtgttgagatgattgattagatctttgaataaacaaatatgtgtatgaattggtgacag

Basic information

species Arabidopsis thaliana
transcript AT2G47630.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86040706|gb|DR336461.1|DR336461
EST:     CTCAAGATCTAGCTCCGGTCATGAAGTCGTCGGAAWTCCAATACCACGAG                         GAATACGTGAGAAATTCAAGAGGTGTAGAGTTGTTCGCATGTAGATGGATC
genomic: CTCAAGATCTAGCTCCGGTCATGAAGTCGTCGGAATTCCAATACCACGAGgttctctctc ... ttggtgacagGAATACGTGAGAAATTCAAGAGGTGTAGAGTTGTTCGCATGTAGATGGATC
EST: gi|86040705|gb|DR336460.1|DR336460
EST:     CTCAAGATCTAGCTCCGGTCATGAAGTCGTCGGAATTCCAATACCACGAG                         GAATACGTGAGAAATTCAAGAGGTGTAGAGTTGTTCGCATGTAGATGGATC
genomic: CTCAAGATCTAGCTCCGGTCATGAAGTCGTCGGAATTCCAATACCACGAGgttctctctc ... ttggtgacagGAATACGTGAGAAATTCAAGAGGTGTAGAGTTGTTCGCATGTAGATGGATC
EST: gi|86040708|gb|DR336463.1|DR336463
EST:     CTCAAGATCTAGCTCCGGTCATGAAGTCGTCGGAATTCCAATACCACGAG                         GAATACGTGAGAAATTCAAGAGGTGTAGAGTTGTTCGCATGTAGATGGATC
genomic: CTCAAGATCTAGCTCCGGTCATGAAGTCGTCGGAATTCCAATACCACGAGgttctctctc ... ttggtgacagGAATACGTGAGAAATTCAAGAGGTGTAGAGTTGTTCGCATGTAGATGGATC
EST: gi|86040701|gb|DR336456.1|DR336456
EST:     TGAAGTCGTCGGAATTCCAATACCACGAG                         GAATACGTGAGAAATTCAAGAGGTGTAGAGTTGTTCGCATGTAGATGGATC
genomic: TGAAGTCGTCGGAATTCCAATACCACGAGgttctctctc ... ttggtgacagGAATACGTGAGAAATTCAAGAGGTGTAGAGTTGTTCGCATGTAGATGGATC
EST: gi|86040707|gb|DR336462.1|DR336462
EST:     CTCAAGATCTAGCTCCGGTCATGAAGTCGTCGGAATTCCAATACCACGAG                         GAATACGTGAGAAATTCAAGAGGTGTAGAGTTGTTCGCATGTAGATGGATC
genomic: CTCAAGATCTAGCTCCGGTCATGAAGTCGTCGGAATTCCAATACCACGAGgttctctctc ... ttggtgacagGAATACGTGAGAAATTCAAGAGGTGTAGAGTTGTTCGCATGTAGATGGATC
EST: gi|124820912|gb|EH905778.1|EH905778
EST:     CTCAAGATCTAGCTCCGGTCATGAAGTCGTCGGAATTCCAATACCACGAG                         GAATACGTGAGAAATTCAAGAGGTGTAGAGTTGTTCGCA
genomic: CTCAAGATCTAGCTCCGGTCATGAAGTCGTCGGAATTCCAATACCACGAGgttctctctc ... ttggtgacagGAATACGTGAGAAATTCAAGAGGTGTAGAGTTGTTCGCA
EST: gi|86040702|gb|DR336457.1|DR336457
EST:     CTCAAGATCTAGCTCCGGTCATGAAKTCGTCGGAATTCCAATACCACGAG                         GAATACGTGAGAAATTCAAGAGGTGTAGAGTTGTTCGCATGTAGATGGATC
genomic: CTCAAGATCTAGCTCCGGTCATGAAGTCGTCGGAATTCCAATACCACGAGgttctctctc ... ttggtgacagGAATACGTGAGAAATTCAAGAGGTGTAGAGTTGTTCGCATGTAGATGGATC