Sequence
atgc intronic sequence ATGC exonic sequenceCTGTGACAAAACCGTGTACGTGATGGATTTGTTAACATTAGAGGGTAATACTTATCACAAATCATGTTTCAGATGCACCCATTGCAAAGGCACTCTCGTGgtatttctcttttcttcttcttcctccattgttactctgtttttcgacaatgcttcattgttttaaaagaccacatcttttcttaacacag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G45800.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G45800.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv15s0046g03370.t01 (Vitis vinifera), 5'ss of exon 1
CTGTGACAAAACCGTGTACGTGATGGATTTGTTAACATTAGAGGGTAATACTTATCACAAATCATGTTTCAGATGCACCCATTGCAAAGGCACTCTCGTGgtatttctcttttcttcttcttcctccattgttactctgtttttc-gacaatgcttcattgttttaaaagaccacatcttttcttaacacag-----------------------
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TTGTGATAAGACTGTTTATGTGGTGGACTTGTTGTCTGCAGATGGAGCATCTTATCATAAAACATGCTTCAAATGCAGCCATTGCAAAGGCACCCTTGTGgtatgtttcttctaagcctatttttcccctgtttttttttttttttggtaaatttttacgaaaatcaatatctacgtaaatttatgagatataacaagtgggttttactttgcag
upper sequence: AT2G45800.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: PP1S80_3V6.1 (Physcomitrella patens), 5'ss of exon 1
CTGTGACAAAACCGTGTACGTGATGGATTTGTTAACATTAGAGGGTAATACTTATCACAAATCATGTTTCAGATGCACCCATTGCAAAGGCACTCTCGTGgtatttctcttttcttcttcttcctccattgttactctgtttttcgacaatgcttcattgttttaaaagaccacatcttttcttaacacag-------------
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GTGTGAGAAGACGGTGTACCTAGTGGAGCAGCTCACGGCTGACGGGGTCGTGTATCACAAATCCTGCTTCCGATGCAACCATTGCAAAGGGACTCTCAAGgttagtagcgggatcgactcttcctccgatgccgctttgctt----atgtttcggagtagagtggagtgatccggagtctggctgagattgaggttggatgtcgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19878067|gb|AU238898.1|AU238898EST: CTTATCACAAATCATGTTTCAGATGCACCCATTGCAAAGGCACTCTCGTG ATAAGCAATTACTCATCAATGGATGGAGTTCTTTACTGTAAGCCACACTTC
genomic: CTTATCACAAATCATGTTTCAGATGCACCCATTGCAAAGGCACTCTCGTGgtatttctct ... cttaacacagATAAGCAATTACTCATCAATGGATGGAGTTCTTTACTGTAAGCCACACTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGTGACAAAACCGTGTACGTGATGGATTTGTTAACATTAGAGGGTAATACTTATCACAAATCATGTTTCAGATGCACCCATTGCAAAGGCACTCTCGTGgtatttctcttttcttcttcttcctccattgttactctgtttttcgacaatgcttcattgttttaaaagaccacatcttttcttaacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG