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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCGAAATCGTCTCCTGTTTCTTCTGCTTTCATGGATGCTTCAAATCCCAATTCTTCTAGAAAATCTAATGTCTCTTCCTTCGCTCAGTCCAGTCGAAGgtgaattctaatttttcaaattattcgaaaagtcaaaatcccttttgattttccctcgttttttcatgtaaggtttggtgtttgattttgatggatttag

Basic information

species Arabidopsis thaliana
transcript AT2G45330.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19875319|gb|AU236150.1|AU236150
EST:     AATTCTTCTAGAAAATCTAATGTCTCTTCCTTCGCTCAGTCCAGTCGAAG                         CGGTGGTAGAGGAGGAGGATATGAGAGAGATAACGATCGACGGAGACCTCA
genomic: AATTCTTCTAGAAAATCTAATGTCTCTTCCTTCGCTCAGTCCAGTCGAAGgtgaattcta ... atggatttagCGGTGGTAGAGGAGGAGGATATGAGAGAGATAACGATCGACGGAGACCTCA
EST: gi|86024310|gb|DR320063.1|DR320063
EST:     AATTCTTCTAGAAAATCTAATGTCTCTTCCTTCGCTCAGTCCAGTCGAAG                         CGGTGGTAGAGGAGGAGGATATGAGAGAGATAACGATCGACGGAGACCTCA
genomic: AATTCTTCTAGAAAATCTAATGTCTCTTCCTTCGCTCAGTCCAGTCGAAGgtgaattcta ... atggatttagCGGTGGTAGAGGAGGAGGATATGAGAGAGATAACGATCGACGGAGACCTCA
EST: gi|86024311|gb|DR320064.1|DR320064
EST:     AATTCTTCTAGAAAATCTAATGTCTCTTCCTTCGCTCAGTCCAGTCGAAG                         CGGTGGTAGAGGAGGAGGATATGAGAGAGATAACGATCGACGGAGACCTCA
genomic: AATTCTTCTAGAAAATCTAATGTCTCTTCCTTCGCTCAGTCCAGTCGAAGgtgaattcta ... atggatttagCGGTGGTAGAGGAGGAGGATATGAGAGAGATAACGATCGACGGAGACCTCA