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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCTATTATGGAGTTGGACATATGCTTAATGACATTACTGCTTCTTGTTGGTTCACTTACCTTCTCTTGTTTTTAACCCAAATTGGCCTCTCCCCAAGgtaaaatcttctcctcagtttttgtaaaaagttcttcacttttaatctgtggattagtgagattaatcgagatttgttctcaag

Basic information

species Arabidopsis thaliana
transcript AT2G44280.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G44280.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA08G16870.1 (Glycine max), 5'ss of exon 2
TGTTCTATTATGGAGTTGGACATATGCTTAATGACATTACTGCTTCTTGTTGGTTCACTTACCTTCTCTTGTTTTTAACCCAAATTGGCCTCTCCCCAAGgta---------aaatctt-----ctcctcagtttttgtaaa-aagttcttcacttt--taatctgtggattagtgagattaatcgagatttgttctcaag-
| || ||||||||  | ||||| ||||| |||||||| |||||| ||||||||||||| ||  |  | ||||| || ||  | ||||| || || |||||||          || ||||     ||| |||  |  | ||   ||||| |  | | |  ||   ||| ||||  ||  | | |   ||||      |  |  
TCTTTTATTATGGCATGGGACACATGCTCAATGACATAACTGCTGCTTGTTGGTTCACATATTTATTATTGTTCTTGACAGATATTGGACTTTCACCAAGgtgcattttatgaattctttttcgctcatcaactagtttagctaagttttgtattataatagcttgttgattgatgtaactga--aagatcaaaatttgaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116399884|gb|EG442476.1|EG442476
EST:     TGGTTCACTTACCTTCTCTTGTTTTTAACCCAAATTGGCCTCTCCCCAAG                         GGATGCTGCAATTGTCATGCTCTCTGGTCAAGTTGCTGATGGTTTTGCTAC
genomic: TGGTTCACTTACCTTCTCTTGTTTTTAACCCAAATTGGCCTCTCCCCAAGgtaaaatctt ... tgttctcaagGGATGCTGCAATTGTCATGCTCTCTGGTCAAGTTGCTGATGGTTTTGCTAC