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CTAGGGTTTCTAGTCACTTGAAGCTTCTCTTAAAAAACCTGTCTCACTCCTCGTCAACCTCTTCCTCTCCCGCTGTCGCCAAGATTGAATCTTTTTTCAGgtttgaatctatctttagagtaatgagtttctctgatttcccgacaaaacatgtcttaaacgctggcttccttctgttgttgtccagttctgctttcctc...
species | Arabidopsis thaliana |
transcript | AT2G42810.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGTCAACCTCTTCCTCTCCCGCTGTCGCCAAGATTGAATCTTTTTTCAG TTGTGGCTTCACCGGATAATAAGGAATTCAGTAAGAGATAAGTTCATCCTGEST: gi|86073689|gb|DR369446.1|DR369446
genomic: TCGTCAACCTCTTCCTCTCCCGCTGTCGCCAAGATTGAATCTTTTTTCAGgtttgaatct ... tgtcaatcagTTGTGGCTTCACCGGATAATAAGGAATTCAGTAAGAGATAAGTTCATCCTG
EST: TCGTCAACCTCTTCCTCTCCCGCTGTCGCCAAGATTGAATCTTTTTTCAG TTGTGGCTTCACCGGATAATAAGGAATTCAGTAAGAGATAAGTTCATCCTGEST: gi|86073688|gb|DR369445.1|DR369445
genomic: TCGTCAACCTCTTCCTCTCCCGCTGTCGCCAAGATTGAATCTTTTTTCAGgtttgaatct ... tgtcaatcagTTGTGGCTTCACCGGATAATAAGGAATTCAGTAAGAGATAAGTTCATCCTG
EST: TCGTCAACCTCTTCCTCTCCCGCTGTCGCCAAGATTGAATCTTTTTTCAG TTGTGGCTTCACCGGATAATAAGGAATTCAGTAAGAGATAAGTTCATCCTGEST: gi|152035616|gb|BP859235.2|BP859235
genomic: TCGTCAACCTCTTCCTCTCCCGCTGTCGCCAAGATTGAATCTTTTTTCAGgtttgaatct ... tgtcaatcagTTGTGGCTTCACCGGATAATAAGGAATTCAGTAAGAGATAAGTTCATCCTG
EST: TCGTCAACCTCTTCCTCTCCCGCTGTCGCCAAGATTGAATCTTTTTTCAG TTGTGGCTTCACCGGATAATAAGGAATTCAGTAAGAGATAAGTTCATCCTG
genomic: TCGTCAACCTCTTCCTCTCCCGCTGTCGCCAAGATTGAATCTTTTTTCAGgtttgaatct ... tgtcaatcagTTGTGGCTTCACCGGATAATAAGGAATTCAGTAAGAGATAAGTTCATCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAGGGTTTCTAGTCACTTGAAGCTTCTCTTAAAAAACCTGTCTCACTCCTCGTCAACCTCTTCCTCTCCCGCTGTCGCCAAGATTGAATCTTTTTTCAGgtttgaatctatctttagagtaatgagtttctctgatttcccgacaaaacatgtcttaaacgctggcttccttctgttgttgtccagttctgctttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctttcct