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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCATCATCATATTTGGCACCTATAGATTCTGTGATGTATTGGTACTCGAATCTTGAAAATGGCAAGTTTTGGTTCCCTGCTCAAGTCTACAATCGCGAGgtaatcatgcttatgatcgaatcatgaacaaagatttcgtcttttttttgtgtgtggttttggtgttacccatttgactgaattggagaaaaattgcttcttttgatttctaaatttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G41170.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G41170.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA03G28210.1 (Glycine max), 5'ss of exon 1
ATCATCATCATATTTGGCACCTATAGATTCTGTGATGTATTGGTACTCGAATCTTGAAAATGGCAAGTTTTGGTTCCCTGCTCAAGTCTACAATCGCGAGgtaatcatgcttatgatcgaatcatgaacaaagatttcgtcttttttttgtgtgtggttttggtgttacccatttgactgaattggagaaaaattgcttcttttgatttctaaatttgcag
|   |||      |    |||   ||||||  |      ||  ||      |||||||| |||||| ||||||||||||||||||||||| || || ||||||||       |      ||||     ||    |||  |  || | ||        |       | ||| || | |        || | ||  ||  | |  ||                
AGAGTCAAGTAGCTCATTACCAGAAGATTCAATAGCAGCTTTATATCTTTCTCTTGAAAGTGGCAAATTTTGGTTCCCTGCTCAAGTCTATAACCGTGAGgtaattggagccacat---aatctgattcatgacttttatgcttctcttaatctcaatgactaaat-accaatattatgtgg--agatataaggtgagtttgatgg---------------

upper sequence: AT2G41170.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA19G30990.1 (Glycine max), 5'ss of exon 1
ATCATCATCATATTTGGCACCTATAGATTCTGTGATGTATTGGTACTCGAATCTTGAAAATGGCAAGTTTTGGTTCCCTGCTCAAGTCTACAATCGCGAGgtaatcatgcttatgatcgaatcatgaacaaagatttcgtcttttttttgtgtgtggttttggtgttacccatttgactgaattggagaaaaattgcttcttttgatt-tctaaatttgcag-------------
|   |||      |    | |   ||||||  |      |   ||      |||||||| |||||| ||||||||||| ||||||||||| || || ||||||||  || ||   |   |||| |||   | || ||  | |  || |  ||     | |   ||      ||   | |    || | ||   ||  | ||||||    | |   ||  ||              
ACAGTCAAATAGCTCATTATCAGAAGATTCAATCGCAGCTCTATATCTTTCTCTTGAAAGTGGCAAATTTTGGTTCCCCGCTCAAGTCTATAACCGTGAGgtaat--tggttgccacataatc-tgattcatgactttttatgcttctc-tg---aatctcaatgac-taaataccaatattctgcacaatggttcttccttttggggattttgtttcacactttcctttttcag