1 5' 3' | 2 5' 3' | 3 5' 3' |
CTCTCTGAAGCTGAGATCAAACAGCTCTGTACTACAGCTAGAGATATTTTCCTTCAGCAACCCAATTTACTTGAGCTTGAGGCTCCCATCAAAATCTGTGgtatcttcccaatttgattcgttgattttaataatttcgtcggaattgattttagggttcttattgtgtttcttagattttccaaaagtgtgaacttggt...
species | Arabidopsis thaliana |
transcript | AT2G39840.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGCTCCCATCAAAATCTGTG GTGACATACATGGGCAATATAGTGATTTGTTGAGGCTATTTGAGTAATGGTEST: gi|19876690|gb|AU237521.1|AU237521
genomic: AGGCTCCCATCAAAATCTGTGgtatcttccc ... cttaaaccagGTGACATACATGGGCAATATAGTGATTTGTTGAGGCTATTTGAGTA-TGGT
EST: CCTTCAGCAACCCAATTTACTTGAGCTTGAGGCTCCCATCAAAATCTGTG GTGACATACATGGGCAATATAGTGATTTGTTGAGGCTATTTGAGTATGGTG
genomic: CCTTCAGCAACCCAATTTACTTGAGCTTGAGGCTCCCATCAAAATCTGTGgtatcttccc ... cttaaaccagGTGACATACATGGGCAATATAGTGATTTGTTGAGGCTATTTGAGTATGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTCTGAAGCTGAGATCAAACAGCTCTGTACTACAGCTAGAGATATTTTCCTTCAGCAACCCAATTTACTTGAGCTTGAGGCTCCCATCAAAATCTGTGgtatcttcccaatttgattcgttgattttaataatttcgtcggaattgattttagggttcttattgtgtttcttagattttccaaaagtgtgaacttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT