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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGCGTCATTGTCCTGAGAAAGGTAAAGGCTTGAATTGCTTAGTTCCACCTCCTAAAGGTTACCGTCAGCCGATTCCATGGCCTAAAAGCCGTGACGAGgtactcctttgtttgcatgagttttgcattttggttggataacatgtcttgggatttagtttaagtagtatttggaatttacttatggatag

Basic information

species Arabidopsis thaliana
transcript AT2G39750.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164010336|gb|ES139812.1|ES139812
EST:     CTCCTAAAGGTTACCGTCAGCCGATTCCATGGCCTAAAAGCCGTGACGAG                         GTATGGTTTAGCAATGTTCCTCATACTCGGCTTGTTGAAGAC
genomic: CTCCTAAAGGTTACCGTCAGCCGATTCCATGGCCTAAAAGCCGTGACGAGgtactccttt ... ttatggatagGTATGGTTTAGCAATGTTCCTCATACTCGGCTTGTTGAAGAC
EST: gi|125298452|gb|EL312537.1|EL312537
EST:     CCTAAAAGCCGTGACGAG                         GTATGGTTTAGCAATGTTCCTCATACTCGGCTTGTTGAAGACAAAGGAGGT
genomic: CCTAAAAGCCGTGACGAGgtactccttt ... ttatggatagGTATGGTTTAGCAATGTTCCTCATACTCGGCTTGTTGAAGACAAAGGAGGT