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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTCCAGCCGTCTCCACTTCTTCTCAGCGACCGGAAAAGCAGCAGAATCCTCTGACTTCACAGAATAAACCGGATCATGATCACAAACCGGATCCTGGgttcgtaccttagcctaataatgcttcttctgtattcaactttgaatggtttctaatgtatttgatttttttgggtttag

Basic information

species Arabidopsis thaliana
transcript AT2G38330.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064741|gb|DR360498.1|DR360498
EST:     CCTCTGACTTCACAGAATAAACCGGATCATGATCACAAACCGGATCCTGG                         GATTGGTAAAATTGGAATGGAGATAATGNCAATTGCATTACCTGCTGCATT
genomic: CCTCTGACTTCACAGAATAAACCGGATCATGATCACAAACCGGATCCTGGgttcgtacct ... ttgggtttagGATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATT
EST: gi|86064735|gb|DR360492.1|DR360492
EST:     CCTCTGACTTCACAGAATAAACCGGATCATGATCACAAACCGGATCCTGG                         GATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATT
genomic: CCTCTGACTTCACAGAATAAACCGGATCATGATCACAAACCGGATCCTGGgttcgtacct ... ttgggtttagGATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATT
EST: gi|86064736|gb|DR360493.1|DR360493
EST:     CCTCTGACTTCACAGAATAAACCGGATCATGATCACAAACCGGATCCTGG                         GATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATT
genomic: CCTCTGACTTCACAGAATAAACCGGATCATGATCACAAACCGGATCCTGGgttcgtacct ... ttgggtttagGATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATT
EST: gi|19876049|gb|AU236880.1|AU236880
EST:     CCTCTGACTTCACAGAATAAACCGGATCATGATCACAAACCGGATCCTGG                         GATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATT
genomic: CCTCTGACTTCACAGAATAAACCGGATCATGATCACAAACCGGATCCTGGgttcgtacct ... ttgggtttagGATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATT
EST: gi|86064739|gb|DR360496.1|DR360496
EST:     CCTCTGACTTCACAGAATAAACCGGATCATGATCACAAACCGGATCCTGG                         GATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATT
genomic: CCTCTGACTTCACAGAATAAACCGGATCATGATCACAAACCGGATCCTGGgttcgtacct ... ttgggtttagGATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATT
EST: gi|86064738|gb|DR360495.1|DR360495
EST:     CCTCTGACTTCACAGAATAAACCGGATCATGATCACAAACCGGATCCTGG                         GATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATT
genomic: CCTCTGACTTCACAGAATAAACCGGATCATGATCACAAACCGGATCCTGGgttcgtacct ... ttgggtttagGATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATT
EST: gi|86064742|gb|DR360499.1|DR360499
EST:     CCTCTGACTTCACAGAATAAACCGGATCATGATCACAAACCGGATCCTGG                         GATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATT
genomic: CCTCTGACTTCACAGAATAAACCGGATCATGATCACAAACCGGATCCTGGgttcgtacct ... ttgggtttagGATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATT
EST: gi|86064740|gb|DR360497.1|DR360497
EST:     CCTCTGACTTCACAGAATAAACCGGATCATGATCACAAACCGGATCCTGG                         GATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATT
genomic: CCTCTGACTTCACAGAATAAACCGGATCATGATCACAAACCGGATCCTGGgttcgtacct ... ttgggtttagGATTGGTAAAATTGGAATGGAGATAATGTCAATTGCATTACCTGCTGCATT