1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTAATGTAAAGTAAAGCAATGGGAATTAGTAGAAATAGGTTTCTTTGTGAAATATGTTGTTATCTTTGGTGAGCAAGCGCTCACTAGAGGTAGATTCCAGgtaaaattatatttctctaatcatttactaatctcgtgattaagatcataacatttatttgatgaattttgatttgcag
species | Arabidopsis thaliana |
transcript | AT2G37290.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AATATGTTGTTATCTTTGGTGAGCAAGCGCTCACTAGAGGTAGATTCCAG GGACGCCTATGGATTTGCCTTGAGACCTCAACACGTTCAGAGATATCAAGAEST: gi|116398840|gb|EG441432.1|EG441432
genomic: AATATGTTGTTATCTTTGGTGAGCAAGCGCTCACTAGAGGTAGATTCCAGgtaaaattat ... tgatttgcagGGACGCCTATGGATTTGCCTTGAGACCTCAACACGTTCAGAGATATCAAGA
EST: AATATGTTGTTATCTTTGGTGAGCAAGCGCTCACTAGAGGTAGATTCCAG GGACGCCTATGGGTTTGCCTTGAGACCTCAACACGTTCAGAGATATCAAGAEST: gi|116401133|gb|EG443725.1|EG443725
genomic: AATATGTTGTTATCTTTGGTGAGCAAGCGCTCACTAGAGGTAGATTCCAGgtaaaattat ... tgatttgcagGGACGCCTATGGATTTGCCTTGAGACCTCAACACGTTCAGAGATATCAAGA
EST: AATATGTTGTTATCTTTGGTGAGCAAGCGCTCACTAGAGGTAGATTCCAG GGACGCCTATGGATTTGCCTTGAGACCTCAACACGTTCAGAGATATCAAGA
genomic: AATATGTTGTTATCTTTGGTGAGCAAGCGCTCACTAGAGGTAGATTCCAGgtaaaattat ... tgatttgcagGGACGCCTATGGATTTGCCTTGAGACCTCAACACGTTCAGAGATATCAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAATGTAAAGTAAAGCAATGGGAATTAGTAGAAATAGGTTTCTTTGTGAAATATGTTGTTATCTTTGGTGAGCAAGCGCTCACTAGAGGTAGATTCCAGgtaaaattatatttctctaatcatttactaatctcgtgattaagatcataacatttatttgatgaattttgatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG