Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAAAAATATCTTCGGCTTCAATTTCGTTCGATTTACCCTAAATTCTCGACTAGTGTTCGTCAATCCCACTTCCAATTCCACATTTCAAACCTTTTCAGgtaatatttctcatatttttcgtgttttttttcggggtcaaacttatttttttaaaaatttcaattcaaatttcgagtttgtatttagtaaccctagttc...

Basic information

species Arabidopsis thaliana
transcript AT2G36960.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069765|gb|DR365522.1|DR365522
EST:     ACTAGTGTTCGTCAATCCCACTTCCAATTCCACATTTCAAACCTTTTCGG                         GAAGTTGAAATCAAAAGCATGAATGCTTAAACAGTTTACGCATTATTGCGA
genomic: ACTAGTGTTCGTCAATCCCACTTCCAATTCCACATTTCAAACCTTTTCAGgtaatatttc ... tgatttgtagGAAGTTGAAATCAAAAGCATGAATGCTTAAACAGTTTACGCATTATTGCGA
EST: gi|86069766|gb|DR365523.1|DR365523
EST:     ACTAGTGTTCGTCAATCCCACTTCCAATTCCACATTTCAAACCTTTTCGG                         GAAGTTGAAATCAAAAGCATGAATGCTTAAACAGTTTACGCATTATTGCGA
genomic: ACTAGTGTTCGTCAATCCCACTTCCAATTCCACATTTCAAACCTTTTCAGgtaatatttc ... tgatttgtagGAAGTTGAAATCAAAAGCATGAATGCTTAAACAGTTTACGCATTATTGCGA
EST: gi|86069770|gb|DR365527.1|DR365527
EST:     ACTAGTGTTCGTCAATCCCACTTCCAATTCCACATTTCAAACCTTTTCGG                         GAAGNTGAAATCAAAAGCATGAATGCTTAAACAGTTTACGCATTATTGCGA
genomic: ACTAGTGTTCGTCAATCCCACTTCCAATTCCACATTTCAAACCTTTTCAGgtaatatttc ... tgatttgtagGAAGTTGAAATCAAAAGCATGAATGCTTAAACAGTTTACGCATTATTGCGA
EST: gi|86069767|gb|DR365524.1|DR365524
EST:     ACTAGTGTTCGTCAATCCCACTTCCAATTCCACATTTCAAACCTTTTCGG                         GAAGTTGAAATCAAAAGCATGAATGCTTAAACAGTTTACGCATTATTGCGA
genomic: ACTAGTGTTCGTCAATCCCACTTCCAATTCCACATTTCAAACCTTTTCAGgtaatatttc ... tgatttgtagGAAGTTGAAATCAAAAGCATGAATGCTTAAACAGTTTACGCATTATTGCGA
EST: gi|86069769|gb|DR365526.1|DR365526
EST:     ACTAGTGTTCGTCAATCCCACTTCCAATTCCACATTTCAAACCTTTTCGG                         GAAGTTGAAATCAAAAGCATGAATGCTTAAACAGTTTACGCATTATTGCGA
genomic: ACTAGTGTTCGTCAATCCCACTTCCAATTCCACATTTCAAACCTTTTCAGgtaatatttc ... tgatttgtagGAAGTTGAAATCAAAAGCATGAATGCTTAAACAGTTTACGCATTATTGCGA
EST: gi|86069768|gb|DR365525.1|DR365525
EST:     ACTAGNGTTCGTCAATCCCACTTCCAATTCCACATTTCAAACCTTTTCAG                         GAAGTTGAAATCAAAAGCATGAATGCTTAAACAGTTTACGCATTATTGCGA
genomic: ACTAGTGTTCGTCAATCCCACTTCCAATTCCACATTTCAAACCTTTTCAGgtaatatttc ... tgatttgtagGAAGTTGAAATCAAAAGCATGAATGCTTAAACAGTTTACGCATTATTGCGA
EST: gi|86069771|gb|DR365528.1|DR365528
EST:     ACTAGTGTTCGTCAATCCCACTTCCAATTCCACATTTCAAACCTTTTCGG                         GAAGTTGAAATCAAAAGCATGAATGCTTAAACAGTTTACGCATTATTGCGA
genomic: ACTAGTGTTCGTCAATCCCACTTCCAATTCCACATTTCAAACCTTTTCAGgtaatatttc ... tgatttgtagGAAGTTGAAATCAAAAGCATGAATGCTTAAACAGTTTACGCATTATTGCGA