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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAAGTGATCAGAAGCTGCCAACACTGTACCTGTTAGACAGCATTGTGAAGAACATCGGAAGGGATTACATTAAGTACTTTGGTGCCAGGCTGCCTGAGgtttggtgctttgttgatagtcatggttatagaatgtttttttcctagcaaattcatctctgatcaccctctttttacttctctgaag

Basic information

species Arabidopsis thaliana
transcript AT2G36480.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G36480.3 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA03G34910.1 (Glycine max), 5'ss of exon 2
ACCAAGTGATCAGAAGCTGCCAACACTGTACCTGTTAGACAGCATTGTGAAGAACATCGGAAGGGATTACATTAAGTACTTTGGTGCCAGGCTGCCTGAGgtttggtgct--ttgttgatagtcatggttatagaatgtttttttcctagcaaattcatctctg---atcaccctctttttacttctctgaag---------
 ||||||||||| || |||||| | || ||||| |||||||| ||||| |||||||| ||| ||||||| || ||||| |||| | |||| || ||||||||  | |  |  || |   ||  |||     |  | ||  ||| |  |   |   | ||   ||   || |       ||||  | | |||||         
TCCAAGTGATCAAAAACTGCCATCTCTTTACCTCTTAGACAGTATTGTTAAGAACATTGGACGGGATTATATAAAGTATTTTGCTTCCAGACTACCTGAGgtcagatatttattatctttaaccatttaccttca-tgcctttattttgatatgcttattattgtatatgatgaatcctttagat-tgtgaagttatgaaat

upper sequence: AT2G36480.3 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv08s0007g03880.t01 (Vitis vinifera), 5'ss of exon 2
ACCAAGTGATCAGAAGCTGCCAACACTGTACCTGTTAGACAGCATTGTGAAGAACATCGGAAGGGATTACATTAAGTACTTTGGTGCCAGGCTGCCTGAGgtttgg----tgctttgttgatagtc-atggttatagaatgtttttttcc--tagcaaattcatctctgat--caccctctttttacttctctgaag---
 || ||||| || ||||||||| | || || || ||||| |||||||||||||| || ||||| ||||| || || || |||| |||||| |||||||||||| |     |  |   |   | ||| ||  |||    |||| |   |    ||   ||| ||| | | ||       |  ||||      | ||     
TCCTAGTGAGCAAAAGCTGCCATCTCTCTATCTTTTAGATAGCATTGTGAAGAATATTGGAAGAGATTATATCAAATATTTTGCTGCCAGACTGCCTGAGgttagaattttattccatgtgtggtctataattacttgatgtgtccctatgataaataatgcatattttatgctgttgttattttgtcataccgactagt