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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGAGTTCAACGTCGACGATATGAAGATCGTCTGGGCCGGTTCCCGCCACGCTTTCGATGTTTCAAATCGTATGTCTCGCCTCGTCGCTAATGATCCGgtaagatttctccttcctcctttctctgtttttccggcgacatttccgatgtgaatttcgaaacttttgccatgttaag

Basic information

species Arabidopsis thaliana
transcript AT2G35690.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35690.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA05G04940.1 (Glycine max), 5'ss of exon 1
AGCAGAGTTCAACGTCGACGATATGAAGATCGTCTGGGCCGGTTCCCGCCACGCTTTCGATGTTTCAAATCGTATGTCTCGCCTCGTCGCTAATGATCCGgtaagatttctccttcctcctttc---tctgttt-ttccg--gcgacatttccgatgtgaatttcgaaacttttgccatgttaag----------------
  |  ||||| | |||||||| ||||||||||| ||||||||||| || |||||||| || || ||  |    ||| |||||||||| || |  |||||||| |  | | |  |  |||  |||   |  |||  ||| |  | ||| |||   | |||  |  |||   |   | |     |                  
TTCGCAGTTCGATGTCGACGAGATGAAGATCGTTTGGGCCGGTTCTCGTCACGCTTTTGAAGTATCTGACAAAATGGCTCGCCTCGTTGCCAGCGATCCGgttaattctttattcactctcttcaatttcgttcattctgttgtgacgtttttcaagtgc-tcgcgagcttcccgtctctgcagatttggaacagaaactc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116443143|gb|EG485735.1|EG485735
EST:     ACGCTTTCGATGTTTCAAATCGTATGTCTCGCCTCGTCGCTAATGATCCG                         GTCTTTGAGAAAAGCAAAAGAGCTGTGATGAGTAGGAAAGAGTTGTTCAAG
genomic: ACGCTTTCGATGTTTCAAATCGTATGTCTCGCCTCGTCGCTAATGATCCGgtaagatttc ... ccatgttaagGTCTTTGAGAAAAGCAAAAGAGCTGTGATGAGTAGGAAAGAGTTGTTCAAG
EST: gi|116443141|gb|EG485733.1|EG485733
EST:     ACGCTTTCGATGTTTCAAATCGTATGTCTCGCCTCGTCGCTAATGATCCG                         GTCTTTGAGAAAAGCAAAAGAGCTGTGATGAGTAGGAAAGAGTTGTTCAAG
genomic: ACGCTTTCGATGTTTCAAATCGTATGTCTCGCCTCGTCGCTAATGATCCGgtaagatttc ... ccatgttaagGTCTTTGAGAAAAGCAAAAGAGCTGTGATGAGTAGGAAAGAGTTGTTCAAG