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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCCATGGTTGTGGTGTATATACCTCTGAGGATGGAAGTAGATATGACGGAGAGTTCAAGTGGGGTGTCAAACATGGCCTTGGTAGTTACCATTTCAGgtcagcattgttcttttttactctgcatagtcatttgagtttctggaatatggttgtgctttgacctgtaatggtggtgcattagatccctgtatatgtt...

Basic information

species Arabidopsis thaliana
transcript AT2G35170.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35170.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv02s0012g00090.t01 (Vitis vinifera), 5'ss of exon 3
AGTGCCATGGTTGTGGTGTATATACCTCTGAGGATGGAAGTAGATATGACGGAGAGTTCAAGTGGGGTGTCAAACATGGCCTTGGTAGTTACCATTTCAGgtcagcattg--ttcttttttactctgcatagtcatttgagtttctggaatatggttgtgctttgacctgtaat-ggtggtgcattagatccctgtatatgtt-
||   ||||| || || ||  | || | ||||||||| ||  | ||||  || ||||||||||||||||||||||||||  |||||  |||||||||||||| |   ||   |  || |||| |  | ||  |||||   | ||  | | ||     || |  ||   | || | |||  |    | ||| |||| |||||   
AGACTCATGGCTGCGGAGTTCACACTTGTGAGGATGGGAGCCGGTATGTGGGGGAGTTCAAGTGGGGTGTCAAACATGGGTTTGGTCATTACCATTTCAGgtaaattttagatgtttgtttattgggtatcttcatt---gattgagcactaattgagttccatgttttctatttggttttatgct-gatgcctgaatatggat