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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCGATACTCCAAGGAGCTGGAGCTGCAACGGCTCTCTCGCCGTTTAATTCTATCGATTCCAACAAACTCGTTGCTCCTTCTCGCTCTTCTCTTTCAGgttcgatttcaaatttgtggaatgatctgtttcggcgattaaattgcttgatttggtaagatcttaggagtttttatggggtttttgatgtag

Basic information

species Arabidopsis thaliana
transcript AT2G34590.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164218106|gb|ES029588.1|ES029588
EST:     CTTCTCTTTCAG                         TGAGGAGCAAGAGATACATTGTTGCCGGATCTGATAGTAAAAGCTTTGGTT
genomic: CTTCTCTTTCAGgttcgatttc ... tttgatgtagTGAGGAGCAAGAGATACATTGTTGCCGGATCTGATAGTAAAAGCTTTGGTT
EST: gi|152037978|gb|BP804714.2|BP804714
EST:     TTCTATCGATTCCAACAAACTCGTTGCTCCTTCTCGCTCTTCTCTTTCAG                         TGAGGAGCAAGAGATACATTGTTGCCGGATCTGATAGTAAAAGCTTTGGTT
genomic: TTCTATCGATTCCAACAAACTCGTTGCTCCTTCTCGCTCTTCTCTTTCAGgttcgatttc ... tttgatgtagTGAGGAGCAAGAGATACATTGTTGCCGGATCTGATAGTAAAAGCTTTGGTT
EST: gi|152034282|gb|BP824175.2|BP824175
EST:     TTCTATCGATTCCAACAAACTCGTTGCTCCTTCTCGCTCTTCTCTTTCAG                         TGAGGAGCAAGAGATACATTGTTGCCGGATCTGATAGTAAAAGCTTTGGTT
genomic: TTCTATCGATTCCAACAAACTCGTTGCTCCTTCTCGCTCTTCTCTTTCAGgttcgatttc ... tttgatgtagTGAGGAGCAAGAGATACATTGTTGCCGGATCTGATAGTAAAAGCTTTGGTT