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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAATTCTCTCTCTCTAGCTATGGCGCTTTCTTCAGCTTTCAAGGAGAGGCTCGATCAAATGGAGTTCACCAGAAACCAACGACTCAATCTTCTCCAGgtatcgatcaatttagaatcctagcttctcttcgttccactgcatcatcgagtttcaatgtcgctagtatgtaaatgtgagaatcgctatatccatgtgc...

Basic information

species Arabidopsis thaliana
transcript AT2G34580.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116418833|gb|EG461425.1|EG461425
EST:     GGCTCGATCAAATGGAGTTCACCAGAAACCAACGACTCAATCTTCTCCAG                         GCGGAGAAAGAACTACAAGTGAACAAAGCACAGATTTTAGCATCGAAGCAC
genomic: GGCTCGATCAAATGGAGTTCACCAGAAACCAACGACTCAATCTTCTCCAGgtatcgatca ... gtttgagtagGCGGAGAAAGAACTACAAGTGAACAAAGCACAGATTTTAGCATCGAAGCAC
EST: gi|116418831|gb|EG461423.1|EG461423
EST:     GATCAAATGGAGTTCACCAGAAACCAACGACTCAATCTTCTCCAG                         GCGGAGAAAGAACTACAAGTGAACAAAGCACAGATTTTAGCATCGAAGCAC
genomic: GATCAAATGGAGTTCACCAGAAACCAACGACTCAATCTTCTCCAGgtatcgatca ... gtttgagtagGCGGAGAAAGAACTACAAGTGAACAAAGCACAGATTTTAGCATCGAAGCAC
EST: gi|116418822|gb|EG461414.1|EG461414
EST:     GATCAAATGGAGTTCACCAGAAACCAACGACTCAATCTTCTCCAG                         GCGGAGAAAGAACTACAAGTGAACAAAGCACAGATTTTAGCGTCGAAGCAC
genomic: GATCAAATGGAGTTCACCAGAAACCAACGACTCAATCTTCTCCAGgtatcgatca ... gtttgagtagGCGGAGAAAGAACTACAAGTGAACAAAGCACAGATTTTAGCATCGAAGCAC
EST: gi|116418816|gb|EG461408.1|EG461408
EST:     GATCAAATGGAGTTCACCAGAAACCAACGACTCAATCTTCTCCAG                         GCGGAGAAAGAACTACAAGTGAACAAAGCACAGATTTTAGCATCGAAGCAC
genomic: GATCAAATGGAGTTCACCAGAAACCAACGACTCAATCTTCTCCAGgtatcgatca ... gtttgagtagGCGGAGAAAGAACTACAAGTGAACAAAGCACAGATTTTAGCATCGAAGCAC
EST: gi|116418811|gb|EG461403.1|EG461403
EST:     GGCTCGATCAAATGGAGTTCACCAGAAACCAACGACTCAATCTTCTCCAG                         GCGGAGAAAGAACTACAAGTGAACAAAGCACAGATTTTAGCATCGAAGCAC
genomic: GGCTCGATCAAATGGAGTTCACCAGAAACCAACGACTCAATCTTCTCCAGgtatcgatca ... gtttgagtagGCGGAGAAAGAACTACAAGTGAACAAAGCACAGATTTTAGCATCGAAGCAC