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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCAAAGTCAACACAGCTACCGGAAGAAGATTCGAGTCTCTCGGAAATGGCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgttatcattgattttctctgtaaagttctgatcttgatacgatttattcccctcactaatctgtttctctacttcttctgtcaag

Basic information

species Arabidopsis thaliana
transcript AT2G34470.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86021186|gb|DR316932.1|DR316932
EST:     GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACG-                         -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
genomic: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
EST: gi|86021185|gb|DR316931.1|DR316931
EST:     GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACG-                         -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGRGAAGGACGG
genomic: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
EST: gi|86021192|gb|DR316938.1|DR316938
EST:     GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACG-                         -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
genomic: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
EST: gi|86021189|gb|DR316935.1|DR316935
EST:     GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACG-                         -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
genomic: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
EST: gi|116480488|gb|EG523080.1|EG523080
EST:     GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACG-                         -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
genomic: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
EST: gi|86021191|gb|DR316937.1|DR316937
EST:     GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACG-                         -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
genomic: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
EST: gi|86021187|gb|DR316933.1|DR316933
EST:     GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACG-                         -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
genomic: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
EST: gi|86021188|gb|DR316934.1|DR316934
EST:     GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACG-                         -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
genomic: GCATCACACGACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
EST: gi|19879192|gb|AU240023.1|AU240023
EST:     CATCACACNGACCACCATCATCATCATCACGATCATGAGCATGACCACG-                         -A-GAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG
genomic: CATCACAC-GACCACCATCATCATCATCACGATCATGAGCATGACCACGAgttcgtgtta ... ttctgtcaagTAGGAAATCAGACGGCGGAGAAGGGAAGGCGTCGTGGGTGGGGAAGGACGG