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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGTTGACATCGGCAGAGATCATGAGGCAACAAATGAAGGTGACAGAACAGAGTGACAGTCGGCTTCGGAAAACCCTTTTGAGAACGCTTGTTGGTCAAgtaagttaatcgttagcttccttcttctacaagttaatttaaactttgaaatgccttgacacaataccttaattgtttttttttttataaaaaaattag

Basic information

species Arabidopsis thaliana
transcript AT2G33420.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G33420.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv05s0049g01560.t01 (Vitis vinifera), 5'ss of exon 2
ACCGTTGACATCGGCAGAGATCATGAGGCAACAAATGAAGGTGACAGAACAGAGTGACAGTCGGCTTCGGAAAACCCTTTTGAGAACGCTTGTTGGTCAAgtaagttaatcgttagcttccttcttctacaagttaatttaaactttgaaatgc-cttgacacaataccttaattgttttttttttta--taaaaaaattag---
 || ||||| ||||| |||||||||||||| || |||| |||||| || |||||||| | | |||| || || |||||  ||||||  || ||||| |||||| ||      | || |  | | | |   |||  ||    |      ||| |  ||   ||   || |  ||  ||| |||     |  |||   |  |||   
GCCATTGACGTCGGCGGAGATCATGAGGCAGCAGATGAGGGTGACTGAGCAGAGTGATAATAGGCTACGCAAGACCCTCATGAGAAGCCTCGTTGGCCAAgtacgt-----atcagttatcatatgcatgaagaaaaaaggattaggaaaacgttctcttcaagttaacccaaaggttgtttcagaaaattaattcacatagaac