1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGGATATGCATCTTCTCTGCCACTTGATTCCAGCATGAGCTGCTACCTCTCCCTTGAAACAGGTCGTTTTTGGTTCCCAGCTCAAGTTTACAACCGTGAGgtaatcatttcataaacatagttgctccatttttgctttatggatttgattaaagtactaagaggcttttttttggtgaaagagcag
species | Arabidopsis thaliana |
transcript | AT2G32560.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCTTGAAACAGGTCGTTTTTGGTTCCCAGCTCAAGTTTACAACCGTGAG AATGGACATGTAGGGTTCATGTEST: gi|125266629|gb|EL280714.1|EL280714
genomic: CCCTTGAAACAGGTCGTTTTTGGTTCCCAGCTCAAGTTTACAACCGTGAGgtaatcattt ... gaaagagcagAATGGACATGTAGGGTTCATGT
EST: CCTTGAAACAGGTCGTTTTTTGGTTCCCAGCTCAAGTTTACAACCGTGAG AATGGACATGTAGGGTTCATGTTGTCATGCTAEST: gi|124911028|gb|EH985108.1|EH985108
genomic: CCTTGAAACAGGTCG-TTTTTGGTTCCCAGCTCAAGTTTACAACCGTGAGgtaatcattt ... gaaagagcagAATGGACATGTAGGGTTCATGTTGTCATGCTA
EST: TTTTTGGTTCCCAGCTCAAGTTTACAACCGTGAG AATGGACATGTAGGGTTCATGTTGTCATGCTATGATGCGGAGCTCAGCTAT
genomic: TTTTTGGTTCCCAGCTCAAGTTTACAACCGTGAGgtaatcattt ... gaaagagcagAATGGACATGTAGGGTTCATGTTGTCATGCTATGATGCGGAGCTCAGCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGATATGCATCTTCTCTGCCACTTGATTCCAGCATGAGCTGCTACCTCTCCCTTGAAACAGGTCGTTTTTGGTTCCCAGCTCAAGTTTACAACCGTGAGgtaatcatttcataaacatagttgctccatttttgctttatggatttgattaaagtactaagaggcttttttttggtgaaagagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA