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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGGAGCTCTCCTGTATATTGGAAGTTTTCCGCAAAATGCATCAGCTGGAAATTAAACCAAATGTTGTAACCTTTTCAGCGATTCTGAATGCTTGCAGgtttgtttctcctttggatcctctttttgaagttaacgagtgaaagatatgaccaaatagtttgggttttcctagattagctctatgtggttttgctgtttgactccattttctgtgggatacttattttgcttacacgtttgtatctatgtag

Basic information

species Arabidopsis thaliana
transcript AT2G31400.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G31400.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G432850_T01 (Zea mays), 5'ss of exon 1
TGCAGGAGCTCTCCTGTATATTGGAAGTTTTCCGCAAAATGCATCAGCTGGAAATTAAACCAAATGTTGTAACCTTTTCAGCGATTCTGAATGCTTGCAGgtttgtttctcctttggatcctctttttgaagttaacgagtgaaagatatgaccaaatagtttgggttttcctagattagctctatgtggttttgctgtttgactccattttctgtgggatacttattttgcttacacgtttgtatctatgtag
  ||||| || |  |  ||  ||||| | || |  || |||   |||| ||   |    |||||||||||||| ||||| ||||| ||||||||||||||||    |||        ||| | |  ||| ||    |   ||  |    ||    |    ||||  |  | | ||  |   |||||     |   |||| | | ||                                                
CACAGGAACTATTTTTCATTCTGGAATTGTTTCAGAAGATGGTCCAGCAGGGTGTACGGCCAAATGTTGTAACATTTTCTGCGATCCTGAATGCTTGCAGgtactcttc--------atcatttcattggagacttcagatgccactgctgttgtagctctttgtatcgtgccag--tgtttctataaaaatacactgtgtcagtcgtaa--------------------------------------------

upper sequence: AT2G31400.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA18G51190.1 (Glycine max), 5'ss of exon 1
TGCAGGAGCTCTCCTGTATATTGGAAGTTTTCCGCAAAATGCATCAGCTGGAAATTAAACCAAATGTTGTAACCTTTTCAGCGATTCTGAATGCTTGCAGgtttgtttctcctttggatcctctttttgaagttaacgagtgaaagatatgaccaaatagtttgggttttcctagattagctctatgtggttttgctgtttgactccattttctgtgggatacttattttgcttacacgtttgtatctatgtag
 ||| ||    | ||   || || |  | || |  ||||||||  |  ||||||| |||||||||||||| || |||||||| ||  |||||||||||||||     |   ||    ||||  | ||||   ||  |   || |  ||   |    |||   | |    |   |  ||| | |  | |      | |   |||                                                   
GGCAAGACAGTTTCTACTTAGTGCAGATCTTTCAAAAAATGCAAGAAATGGAAATCAAACCAAATGTTGTCACATTTTCAGCCATCTTGAATGCTTGCAGgtagcaattaact----atccaatatttgtgtttgtct--tgcaccattctattttata---tagtcacttacatgttaccccagtataaaagaggtaaatgaaaatga---------------------------------------------

upper sequence: AT2G31400.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA08G28160.1 (Glycine max), 5'ss of exon 1
TGCAGGAGCTCTCCTGTATATTGGAAGTTTTCCGCAAAATGCATCAGCTGGAAATTAAACCAAATGTTGTAACCTTTTCAGCGATTCTGAATGCTTGCAGgtt-tgtttctcctttggatcctctttttgaagtta-acgagtgaaagatatgaccaaatagtt-tgggttttcctagattagctctatgtggttt-tgctgtttgactccattttctgtgggatacttattttgcttacacgtttgtatctatgtag
  || ||    | ||  ||| || |  | || |  ||||||||  |  ||||||| |||||||||||||| || |||||||| ||  |||||||||||||||      |  |  |  |||  |  ||||    ||| || | |  |   |||    |   | ||    |||  || ||| |||    | | |||   || | |  |                                                    
GACAAGACAATTTCTTCATAGTGCAGATCTTTCAAAAAATGCACGAAATGGAAATCAAACCAAATGTTGTCACATTTTCAGCCATCTTGAATGCTTGCAGgtagcaaataactatccgatatttgtttttgtcttacaccattctattttata--tagtcacttacatgttaccccagaatag----aagaggtaaatggtataag----------------------------------------------------

upper sequence: AT2G31400.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv07s0005g01660.t01 (Vitis vinifera), 5'ss of exon 1
TGCAGGAGCTCTCCTGTATATTGGAAGTTTTCCGCAAAATGCATCAGCTGGAAATTAAACCAAATGTTGTAACCTTTTCAGCGATTCTGAATGCTTGCAGgtttgtttctcctttggatcctctttttgaagttaacgagtgaaagatatgaccaaatagtttgggttttcctagattagctctatgtggttttgctgtttgactccattttctgtgggatacttattttgcttacacgtttgtatctatgtag
  |||||  | |  || || ||||  || |||| ||| |||||| ||||||| || |||||||||||||| ||||| ||||| ||||| ||||||||||||| || |||| |    ||| ||   | |    | | | | |  | ||  |   ||     | ||     |  |  ||       |||||| |||| ||  |||||  ||                                             
GACAGGAAATTTTATGCATCTTGGCGGTCTTCCACAAGATGCATGAGCTGGACATCAAACCAAATGTTGTCACCTTCTCAGCAATTCTAAATGCTTGCAGgtatgcttcttcacctgatactgcctatctt-tcaccaaattgaggaccttgtca-----tgtgaaaaatattgaatccagaa-atgtgggtttggtg--tgacta-atc--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86022315|gb|DR318068.1|DR318068
EST:     GAAATTAAACCAAATGTTGTAACCTTTTCAGCGATTCTGAATGCTTGCAG                         TCGGTGTAACTCATTTGAAGATGCATCAATGCTACTAGAGGAGCTCAGGCT
genomic: GAAATTAAACCAAATGTTGTAACCTTTTCAGCGATTCTGAATGCTTGCAGgtttgtttct ... atctatgtagTCGGTGTAACTCATTTGAAGATGCATCAATGCTACTAGAGGAGCTCAGGCT
EST: gi|86022312|gb|DR318065.1|DR318065
EST:     GAAATTAAACCAAATGTTGTAACCTTTTCAGCGATTCTGAATGCTTGCAG                         TCGGTGTAACTCATTTGAAGATGCATCAATGCTACTAGAGGAGCTCAGGCT
genomic: GAAATTAAACCAAATGTTGTAACCTTTTCAGCGATTCTGAATGCTTGCAGgtttgtttct ... atctatgtagTCGGTGTAACTCATTTGAAGATGCATCAATGCTACTAGAGGAGCTCAGGCT
EST: gi|124738740|gb|EH829938.1|EH829938
EST:     GAAATTAAACCAAATGTTGTAACCTTTTCAGCGATTCTGAATGCTTGCAG                         TCGGTGTAACTCATTTGAAGATGC
genomic: GAAATTAAACCAAATGTTGTAACCTTTTCAGCGATTCTGAATGCTTGCAGgtttgtttct ... atctatgtagTCGGTGTAACTCATTTGAAGATGC