1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCACTTTCGGTATCACCAGATTGTACAGTCAAAGATCTTAAGTCTCAGTTACAACCAATCACCAACGTTCTTCCTCGTGGCCAGAAGCTCATCTTCAAAGgtttgatggttaaaattccaataacttttcactgattgagctgattccttataatgggtatttttcaaaatctgatttttgtttcttgaag
species | Arabidopsis thaliana |
transcript | AT2G30105.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACAACCAATCACCAACGTTCTTCCTCGTGGCCAGAAGCTCATCTTCAAAG GTAAGGTTTTGGTTGAAACGTCGACTTTGAAACAATCTGATGTGGGAAGTGEST: gi|86067168|gb|DR362925.1|DR362925
genomic: ACAACCAATCACCAACGTTCTTCCTCGTGGCCAGAAGCTCATCTTCAAAGgtttgatggt ... tttcttgaagGTAAGGTTTTGGTTGAAACGTCGACTTTGAAACAATCTGATGTGGGAAGTG
EST: ACAACCAATCACCAACGTTCTTCCTCGTGGCCAGAAGCTCATCTTCAAAG GTAAGGTTTTGGTTGAAACGTCGACTTTGAAACAATCTGATGTGGGAAGTGEST: gi|86067167|gb|DR362924.1|DR362924
genomic: ACAACCAATCACCAACGTTCTTCCTCGTGGCCAGAAGCTCATCTTCAAAGgtttgatggt ... tttcttgaagGTAAGGTTTTGGTTGAAACGTCGACTTTGAAACAATCTGATGTGGGAAGTG
EST: ACAACCAATCACCAACGTTCTTCCTCGTGGCCAGAAGCTCATCTTCAAAG GTAAGGTTTTGGTTGAAACGNCGACTTTGAAACAATCTGATGTGGGAAGTGEST: gi|86067171|gb|DR362928.1|DR362928
genomic: ACAACCAATCACCAACGTTCTTCCTCGTGGCCAGAAGCTCATCTTCAAAGgtttgatggt ... tttcttgaagGTAAGGTTTTGGTTGAAACGTCGACTTTGAAACAATCTGATGTGGGAAGTG
EST: ACAACCAATCACCAACGTTCTTCCTCGTGGCCAGAAGCTCATCTTCAAAG GTAAGGTTTTGGTTGAAACGTCGACTTTGAAACAATCTGATGTGGGAAGTGEST: gi|86067169|gb|DR362926.1|DR362926
genomic: ACAACCAATCACCAACGTTCTTCCTCGTGGCCAGAAGCTCATCTTCAAAGgtttgatggt ... tttcttgaagGTAAGGTTTTGGTTGAAACGTCGACTTTGAAACAATCTGATGTGGGAAGTG
EST: ACAACCAATCACCAACGTTCTTCCTCGTGGCCAGAAGCTCATCTTCAAAG GTAAGGTTTTGGTTGAAACGTCGACTTTGAAACAATCTGATGTGGGAAGTGEST: gi|86067170|gb|DR362927.1|DR362927
genomic: ACAACCAATCACCAACGTTCTTCCTCGTGGCCAGAAGCTCATCTTCAAAGgtttgatggt ... tttcttgaagGTAAGGTTTTGGTTGAAACGTCGACTTTGAAACAATCTGATGTGGGAAGTG
EST: ACAACCAATCACCAACGTTCTTCCTCGTGGCCAGAAGCTCATCTTCAAAG GTAAGGTTTTGGTTGAAACGTCGACTTTGAAACAATCTGATGTGGGAAGTG
genomic: ACAACCAATCACCAACGTTCTTCCTCGTGGCCAGAAGCTCATCTTCAAAGgtttgatggt ... tttcttgaagGTAAGGTTTTGGTTGAAACGTCGACTTTGAAACAATCTGATGTGGGAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACTTTCGGTATCACCAGATTGTACAGTCAAAGATCTTAAGTCTCAGTTACAACCAATCACCAACGTTCTTCCTCGTGGCCAGAAGCTCATCTTCAAAGgtttgatggttaaaattccaataacttttcactgattgagctgattccttataatgggtatttttcaaaatctgatttttgtttcttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA