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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACGACCAGAGCCGAAACAAGCGGTGTTGACAGAGAGGAGAAAGTAGTGATTGTTGGGGGCGGGATTGGCGGACTTGCCACTGCCGTTGCTCTTCACCGgtaagtatataaattacaaaaaccggttctttgaattttcttagaaactcagagccacttaaccggatatttttgtttgatgggtttag

Basic information

species Arabidopsis thaliana
transcript AT2G29720.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125206923|gb|EL221877.1|EL221877
EST:     ATTGTTGGGGGCGGGATTGGCGGACTTGCCACTGCCGTTGCTCTTCACCG                         GCTTGGAATCCGGTCGGTGGTGTTGGAGCAG
genomic: ATTGTTGGGGGCGGGATTGGCGGACTTGCCACTGCCGTTGCTCTTCACCGgtaagtatat ... atgggtttagGCTTGGAATCCGGTCGGTGGTGTTGGAGCAG
EST: gi|86037178|gb|DR332933.1|DR332933
EST:     ATTGTTGGGGGCGGGATTGGCGGACTTGCCACTGCCGTTGCTCTTCACCG                         GCTTGGAATCCGGTCGGTGGTGTTGGAGCAGGCAGAGTCSCTTCGGACAGG
genomic: ATTGTTGGGGGCGGGATTGGCGGACTTGCCACTGCCGTTGCTCTTCACCGgtaagtatat ... atgggtttagGCTTGGAATCCGGTCGGTGGTGTTGGAGCAGGCAGAGTCGCTTCGGACAGG
EST: gi|86037181|gb|DR332936.1|DR332936
EST:     ATTGTDGGGGGCGGGATTSGCGGACTTGCCACTGCCGTTRCTCTTCACCG                         GCTTGGAATCCGGTCGGTGGTGTTGGAGCAGGCAGAGTCGCTTCGGACAGG
genomic: ATTGTTGGGGGCGGGATTGGCGGACTTGCCACTGCCGTTGCTCTTCACCGgtaagtatat ... atgggtttagGCTTGGAATCCGGTCGGTGGTGTTGGAGCAGGCAGAGTCGCTTCGGACAGG
EST: gi|86037180|gb|DR332935.1|DR332935
EST:     TTGTNGGGGGCGGGATTVGMGGACTTSCCACTGSCCGTTGCTCTTCACCG                         GCTTGGAATCCGGTCGGTGGTGTTGGAGCAGGCAGAGTCGCTTCGGACAGG
genomic: TTGTTGGGGGCGGGATTGGCGGACTTGCCACTG-CCGTTGCTCTTCACCGgtaagtatat ... atgggtttagGCTTGGAATCCGGTCGGTGGTGTTGGAGCAGGCAGAGTCGCTTCGGACAGG