1 5' 3' | 2 5' 3' | 3 5' 3' |
CTCAGTGAAGGTGAAATTCGTCAGCTTTGTGCTGTCTCCAAAGAAATATTTCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttttgttccctttagtttagaaagagtgcttttttggattggggttttagttttgattgatttttagaagcgaatttagtgcatgtttagata...
species | Arabidopsis thaliana |
transcript | AT2G29400.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCG G--ATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAGEST: gi|86065915|gb|DR361672.1|DR361672
genomic: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttt ... tactttatagGTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAG
EST: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCG GTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAGEST: gi|86065908|gb|DR361665.1|DR361665
genomic: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttt ... tactttatagGTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAG
EST: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCG GTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAGEST: gi|86065905|gb|DR361662.1|DR361662
genomic: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttt ... tactttatagGTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAG
EST: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCG GTGATATTCATGGGCAGNATTCAGATCTATTGAGGCTTTTTGAGTATGGAGEST: gi|86065918|gb|DR361675.1|DR361675
genomic: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttt ... tactttatagGTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAG
EST: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCG GTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAGEST: gi|86065899|gb|DR361656.1|DR361656
genomic: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttt ... tactttatagGTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAG
EST: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCG GTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAGEST: gi|86065904|gb|DR361661.1|DR361661
genomic: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttt ... tactttatagGTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAG
EST: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCG GTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAGEST: gi|86065910|gb|DR361667.1|DR361667
genomic: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttt ... tactttatagGTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAG
EST: TCTTCAAAAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCG GTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAGEST: gi|86065907|gb|DR361664.1|DR361664
genomic: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttt ... tactttatagGTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAG
EST: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCG GNGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAGEST: gi|86065917|gb|DR361674.1|DR361674
genomic: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttt ... tactttatagGTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAG
EST: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCG GTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAGEST: gi|301502680|gb|HO208220.1|HO208220
genomic: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttt ... tactttatagGTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAG
EST: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCG GTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAGEST: gi|86065913|gb|DR361670.1|DR361670
genomic: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttt ... tactttatagGTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAG
EST: TCTTNAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCNAGATCTGCG GNGATATTCATGGGCAGGATTCAGATCTATTGAGGCTTTTTGAGTATGGAGEST: gi|86065900|gb|DR361657.1|DR361657
genomic: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttt ... tactttatagGTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAG
EST: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCG GNGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAGEST: gi|86065906|gb|DR361663.1|DR361663
genomic: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttt ... tactttatagGTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAG
EST: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCG GTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAGEST: gi|86065914|gb|DR361671.1|DR361671
genomic: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttt ... tactttatagGTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAG
EST: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCG GTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAGEST: gi|116434806|gb|EG477398.1|EG477398
genomic: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttt ... tactttatagGTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAG
EST: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCG GTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAG
genomic: TCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttt ... tactttatagGTGATATTCATGGGCAGTATTCAGATCTATTGAGGCTTTTTGAGTATGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAGTGAAGGTGAAATTCGTCAGCTTTGTGCTGTCTCCAAAGAAATATTTCTTCAACAGCCCAATCTGCTTGAATTGGAAGCTCCCATCAAGATCTGCGgtcagatttttgttccctttagtttagaaagagtgcttttttggattggggttttagttttgattgatttttagaagcgaatttagtgcatgtttagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaagag