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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCGTTGACAGTTGTTTCCGCGGCGAAGAAGGCTGTTGCAGTGCTTAAAGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctctctcaattgctcaaaatctctaatttctcatctgggtttctgaagattgatttgatgggcatgattaggtcactctcagtgttcaatctgc...

Basic information

species Arabidopsis thaliana
transcript AT2G28190.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502082|gb|HO207622.1|HO207622
EST:     AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG                         GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: gi|116429789|gb|EG472381.1|EG472381
EST:     AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG                         GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: gi|124779393|gb|EH869336.1|EH869336
EST:     CTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG                         GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
genomic: CTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: gi|125192284|gb|EL207238.1|EL207238
EST:     AGTTGTTACTTTGACCCAAGATGACTCAG                         GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
genomic: AGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: gi|125187016|gb|EL201970.1|EL201970
EST:     GTTGTTACTTTGACCCAAGATGACTCAG                         GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
genomic: GTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: gi|124803179|gb|EH891608.1|EH891608
EST:     AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG                         GTCCTACAACTGT
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGT
EST: gi|125204055|gb|EL219009.1|EL219009
EST:     TCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATTACTCAG                         GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
genomic: TCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: gi|116462064|gb|EG504656.1|EG504656
EST:     AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG                         GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: gi|124954322|gb|EL029425.1|EL029425
EST:     AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG                         GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCT
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCT
EST: gi|125109972|gb|EL162162.1|EL162162
EST:     AGGTACGTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG                         GTCCTACAACTGTG
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTG
EST: gi|125315230|gb|EL329315.1|EL329315
EST:     TGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG                         GTCCTACAACTGTGAATGTTCGTATCACTGGTCT
genomic: TGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCT
EST: gi|125311316|gb|EL325401.1|EL325401
EST:     AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG                         GTCCTACAACTGTGA
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGA
EST: gi|125073005|gb|EL137495.1|EL137495
EST:     GGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG                         GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCA
genomic: GGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCA
EST: gi|124856337|gb|EH940774.1|EH940774
EST:     TTGTTACTTTGACCCAAGATGACTCAG                         GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
genomic: TTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: gi|125301301|gb|EL315386.1|EL315386
EST:     TTACTTTGACCCAAGATGACTCAG                         GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
genomic: TTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: gi|116438236|gb|EG480828.1|EG480828
EST:     AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG                         GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: gi|124990187|gb|EL062456.1|EL062456
EST:     GAGTTGTTACTTTGACCCAAGATGACTCAG                         GTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
genomic: GAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATG
EST: gi|124851533|gb|EH935970.1|EH935970
EST:     AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAG                         GTCCTACGACTGTGAATGTTCGTATCACTGGTCTCAC
genomic: AGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctct ... tggcaagcagGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGCGTTGACAGTTGTTTCCGCGGCGAAGAAGGCTGTTGCAGTGCTTAAAGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGgtccgtctctctcaattgctcaaaatctctaatttctcatctgggtttctgaagattgatttgatgggcatgattaggtcactctcagtgttcaatctgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcactctc