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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTCTTCTTCCTTGATATAAAATCTTCAGCCGCCTCTGAAACATAACTAGGGCTTCCGCTTTCTTCACCATTCAGgtttgtctctctccacaaacatcgtcacttctcatttcgtcttcttcgttcatcgtaattccatgaagtttttcgatttctcctgcttaatctgaattctatgtcacaatcgaaaatgaggtttttttttttctttttctaatcgatctcttattgttttcag

Basic information

species Arabidopsis thaliana
transcript AT2G27530.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164107321|gb|ES133397.1|ES133397
EST:     AGGGTCTTCCGCTTTCTTCACCATTCAG                         GATCAGAGATTCGTGACCTGAGAAGACACTCAATA
genomic: AGGG-CTTCCGCTTTCTTCACCATTCAGgtttgtctct ... ttgttttcagGATCAGAGATTCGTGACCTGAGAAGACACTCAATA
EST: gi|164162341|gb|ES017923.1|ES017923
EST:     AGGGCTTCCGCTTTCTTCACCATTCAG                         GATCAGAGATTCGT
genomic: AGGGCTTCCGCTTTCTTCACCATTCAGgtttgtctct ... ttgttttcagGATCAGAGATTCGT
EST: gi|164062961|gb|ES037430.1|ES037430
EST:     AGGGCTTCCGCTTTCTTCACCATTCAG                         GATCAGAGATTCGTGACCTGAAAAGACACTCAATATGAGTAAG
genomic: AGGGCTTCCGCTTTCTTCACCATTCAGgtttgtctct ... ttgttttcagGATCAGAGATTCGTGACCTGAGAAGACACTCAATATGAGTAAG
EST: gi|164056499|gb|ES173886.1|ES173886
EST:     TAGGGCTTCCGCTTTCTTCACCATTCAG                         GATCAGAGATTCGTGACCTGAGAAGACACTCAATA
genomic: TAGGGCTTCCGCTTTCTTCACCATTCAGgtttgtctct ... ttgttttcagGATCAGAGATTCGTGACCTGAGAAGACACTCAATA
EST: gi|125246901|gb|EL260986.1|EL260986
EST:     AGGGCTTCCGTCTTTCTTCACCATTCAG                         GATCAGAGATTCGTGACCTGAGAAGACACTCAATATGAGTAAGCTTCAG
genomic: AGGGCTTCCG-CTTTCTTCACCATTCAGgtttgtctct ... ttgttttcagGATCAGAGATTCGTGACCTGAGAAGACACTCAATATGAGTAAGCTTCAG
EST: gi|164196772|gb|ES135038.1|ES135038
EST:     AGGGCTTCCGCTTTCTTCACCATTCAG                         GATCAGAGATTCGTGAACCTGAGAAGACACTCAATA
genomic: AGGGCTTCCGCTTTCTTCACCATTCAGgtttgtctct ... ttgttttcagGATCAGAGATTCGTGA-CCTGAGAAGACACTCAATA
EST: gi|164093657|gb|ES189149.1|ES189149
EST:     AGGGCGTTCCGCTTTCTTCACCATTCAG                         GATCAGAGATTCGTGACCTGAGAAGACACTCAATATGAGTAAGC
genomic: AGGGC-TTCCGCTTTCTTCACCATTCAGgtttgtctct ... ttgttttcagGATCAGAGATTCGTGACCTGAGAAGACACTCAATATGAGTAAGC
EST: gi|164231451|gb|ES172332.1|ES172332
EST:     AGGGCTTCCGCTTTCTTCACCATTCAG                         GATCAGAGATTCGTGACCTGAGAAGACACTCAATATGAGTAAG
genomic: AGGGCTTCCGCTTTCTTCACCATTCAGgtttgtctct ... ttgttttcagGATCAGAGATTCGTGACCTGAGAAGACACTCAATATGAGTAAG
EST: gi|164060878|gb|ES151905.1|ES151905
EST:     AGGGCTTCCGCTTTCTTCACCAATTCAG                         GATCAGAGATTCGTGACCTGAGAAGACACTCAATA
genomic: AGGGCTTCCGCTTTCTTCACC-ATTCAGgtttgtctct ... ttgttttcagGATCAGAGATTCGTGACCTGAGAAGACACTCAATA
EST: gi|164236450|gb|ES192889.1|ES192889
EST:     AGGGCTTCCGCTTTCTTCACCATTCAG                         GATCAGAGATTCGTGACCTGAGAAGACACTCAATA
genomic: AGGGCTTCCGCTTTCTTCACCATTCAGgtttgtctct ... ttgttttcagGATCAGAGATTCGTGACCTGAGAAGACACTCAATA