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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCTTTGAGAAAGAGAAGCAAAATTCTCTAATCGTTCTTTCTCTGCCCTAATCCACGTATCGTTTGGTGTTCTTCTTCATCGAATCGACATGGCTTCAGgtcttgttcttgttttgctatgtctaatcttctactctgaaacaatctagggttcgaaagttcccgaattcgactacttactttgttacgaatcgatagtgttttattgatttgggttttcgatttttgtgtag

Basic information

species Arabidopsis thaliana
transcript AT2G26990.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163998832|gb|EL971567.1|EL971567
EST:     GTATCGTTTGGTGTTCTTCTTCATCGAATCGACATGGCTTCAG                         ATGCTGACATGGAGGACTATGGATTCGAGTATTCTGATGAG
genomic: GTATCGTTTGGTGTTCTTCTTCATCGAATCGACATGGCTTCAGgtcttgttct ... ttttgtgtagATGCTGACATGGAGGACTATGGATTCGAGTATTCTGATGAG
EST: gi|86049782|gb|DR345537.1|DR345537
EST:     AATCCACGTATCGTTTGGTGTTCTTCTTCATCGAATCGACATGGCTTCAG                         ATGCTGACATGGAGGACTATGGATTCGAGTATTCTGATGAGGAGCAAGAGG
genomic: AATCCACGTATCGTTTGGTGTTCTTCTTCATCGAATCGACATGGCTTCAGgtcttgttct ... ttttgtgtagATGCTGACATGGAGGACTATGGATTCGAGTATTCTGATGAGGAGCAAGAGG
EST: gi|86049785|gb|DR345540.1|DR345540
EST:     AATCCACGTATCGTTTGGTGTTCTTCTTCATCGAATCGACATGGCTTCAG                         ATGCTGACATGGAGGACTATGGATTCGAGTATTCTGATGAGGAGCAAGAGG
genomic: AATCCACGTATCGTTTGGTGTTCTTCTTCATCGAATCGACATGGCTTCAGgtcttgttct ... ttttgtgtagATGCTGACATGGAGGACTATGGATTCGAGTATTCTGATGAGGAGCAAGAGG
EST: gi|86049783|gb|DR345538.1|DR345538
EST:     TTCCCACGTATCGTTTGGTGTTCTTCTTCATCGAATCGACATGGCTTCAG                         ATGCTGACATGGAGGACTATGGATTCGAGTATTCTGATGAGGAGCAAGAGG
genomic: -T-CCACGTATCGTTTGGTGTTCTTCTTCATCGAATCGACATGGCTTCAGgtcttgttct ... ttttgtgtagATGCTGACATGGAGGACTATGGATTCGAGTATTCTGATGAGGAGCAAGAGG