1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAACACAAAAGAAGAATAACCATGGGTGAAGCCGCTAAGgtaatataaactcttccttcttgatttaggatctattcccatttactttagaagtgtttttgcttagcatcagattgatgttttctag
species | Arabidopsis thaliana |
transcript | AT2G26400.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACACAAAAGAAGAATAACCATGGGTGAAGCCGCTAAG GATCAAACTGAAGAAGTGATTCAAGCTTGGTAEST: gi|116474360|gb|EG516952.1|EG516952
genomic: ACACAAAAGAAGAATAACCATGGGTGAAGCCGCTAAGgtaatataaa ... tgttttctagGATCAAACTGAAGAAGTGATTCAAGCTTGGTA
EST: AACACAAAAGAAGAATAACCATGGGTGAAGCCGCTAAG GATCAAACTGAAGAAGTGATTCAAGCTTGGTACTTGGATAATAAGGAAGAGEST: gi|116480054|gb|EG522646.1|EG522646
genomic: AACACAAAAGAAGAATAACCATGGGTGAAGCCGCTAAGgtaatataaa ... tgttttctagGATCAAACTGAAGAAGTGATTCAAGCTTGGTACTTGGATAATAAGGAAGAG
EST: GAACACAAAAGAAGAATAACCATGGGTGAAGCCGCTAAG GATCAAACTGAAGAAGTGATTCAAGCTTGGTACTTGGATAATAAGGAAGAGEST: gi|116480263|gb|EG522855.1|EG522855
genomic: GAACACAAAAGAAGAATAACCATGGGTGAAGCCGCTAAGgtaatataaa ... tgttttctagGATCAAACTGAAGAAGTGATTCAAGCTTGGTACTTGGATAATAAGGAAGAG
EST: ACAAAAGAAGAATAACCATGGGTGAAGCCGCTAAG GATCAAACTGAAGAAGTGATTCAAGCTTGGTACTTGGATAATAAGGAAGAG
genomic: ACAAAAGAAGAATAACCATGGGTGAAGCCGCTAAGgtaatataaa ... tgttttctagGATCAAACTGAAGAAGTGATTCAAGCTTGGTACTTGGATAATAAGGAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACACAAAAGAAGAATAACCATGGGTGAAGCCGCTAAGgtaatataaactcttccttcttgatttaggatctattcccatttactttagaagtgtttttgcttagcatcagattgatgttttctag
- - - AAAGAA
- - - - AAGAAG
- - - - - - - - - - - - - TGAAGC