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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGATCTTCTAAAGAAGAGGAAGATAACAGGTCTTTGCATCAAAAGTAAGAGGTTTCAAATTGGGAACCGGGATTGTCGACTTATTGTTTATCCCCGAGgtatgtaagtgtactagattatctgttttatacggtagacatggaaccaacaatctccttttcaatattctgtttttccttcctatgagctgtctgattgctgcatttgtagtgttgaatgtctgaactgatggtcttactcttaatggcctcag

Basic information

species Arabidopsis thaliana
transcript AT2G25320.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G25320.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA04G06960.1 (Glycine max), 5'ss of exon 1
AAGGATCTTCTAAAGAAGAGGAAGATAACAGGTCTTTGCATCAAAAGTAAGAGGTTTCAAATTGGGAACCGGGATTGTCGACTTATTGTTTATCCCCGAGgtatgtaagtgtactagattatctgttttatacggtagacatggaaccaacaatctccttttcaatattctgtttttccttcctatgagctgtctgattgctgcatttgtagtgttgaatgtctgaactgatggtcttactcttaatggcctcag
|||||| | || ||||||||||| || || ||||| |||||||| || | ||||||||| ||||| || ||||||||||||||||||||||| ||  ||||| || || |||             ||||   ||| | |  |   | |     | | || | ||  ||| || ||   |||    | |||| || |||      || |   ||||||  |||  |||                            
AAGGATTTGCTGAAGAAGAGGAAAATTACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGTAATCGGGATTGTCGACTTATTGTTTACCCTAGAGgtgtgcaa-tgt-------------ttttgcccggcaaatcttttatcg----ttttctgtgcaccatt-tgcttaggcttatagttagctatcagat------atatactgtgttgtttgt--gaa----------------------------

upper sequence: AT2G25320.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA06G07050.1 (Glycine max), 5'ss of exon 1
AAGGATCTTCTAAAGAAGAGGAAGATAACAGGTCTTTGCATCAAAAGTAAGAGGTTTCAAATTGGGAACCGGGATTGTCGACTTATTGTTTATCCCCGAGgtatgtaagtgtactagattatctgttttatacggtagacatggaaccaacaatctccttttcaatattctgtttttccttcctatgagctgtctgattgctgcatttgtagtgttgaatgtctgaactgatggtcttactcttaatggcctcag
|||||| | || ||||||||||| || || ||  | |||||||| || | ||||||||| ||||| ||  |||||||||||||||||||||| ||  ||||| || || |||             | ||   ||| | |  |   | |     | | || | ||  | | || ||   |||    | ||||||| |||      |||||  ||||||   ||  |                              
AAGGATTTGCTGAAGAAGAGGAAAATCACGGGCTTGTGCATCAAGAGCAGGAGGTTTCAGATTGGCAATAGGGATTGTCGACTTATTGTTTACCCTAGAGgtgtgcaa-tgt-------------tctttcccggcaaatcttttatcg----ttttctgtgcaccact-tgcttaggcttatcgttagctgtcagat------atttgctgtgttgtcagtgag------------------------------

upper sequence: AT2G25320.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv04s0008g05690.t01 (Vitis vinifera), 5'ss of exon 1
AAGGATCTTCTAAAGAAGAGGAAGATAACAGGTCTTTGCATCAAAAGTAAGAGGTTTCAAATTGGGAACCGGGATTGTCGACTTATTGTTTATCCCCGAGgtatgtaagtgtactagattatctgttttatacggtagacatggaaccaacaatctccttttcaatattctgtttttccttcctatgagctgtctgattgctgcatttgtagtgttgaatgtctgaactgatggtcttactcttaatggcctcag
|| ||||||||||||||||||||||| || ||| | |||||||| || | ||||||||| |||||||| || |||||||| || ||||||||||| ||||||||   |   |  || ||| |    ||     |       || |        | |  |  | |  || || || ||   |     ||| |||||| |  ||   |||                                               
AAAGATCTTCTAAAGAAGAGGAAGATTACGGGTTTGTGCATCAAGAGCAGGAGGTTTCAGATTGGGAATCGTGATTGTCGCCTGATTGTTTATCCTCGAGgtatcgtaaactgttacattgtagacttctcttgt---gtctgaattttgtggtttattgatta-catactattattagata----gagttgtctgctatcttatttt-----------------------------------------------

upper sequence: AT2G25320.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ25012 (Selaginella moellendorffii), 5'ss of exon 1
AAGGATCTTCTAAAGAAGAGGAAGATAACAGGTCTTTGCATCAAAAGTAAGAGGTTTCAAATTGGGAACCGGGATTGTCGACTTATTGTTTATCCCCGAGgtatgtaagtgtactagattatctgttttatacggta-gacatggaaccaacaatctccttttcaatattctgtttttccttcctatgagctgtctgattgctgcatttgtagtgttgaatgtctgaactgatggtcttactcttaatggcctcag
|| ||||| || |||||| ||| ||| || || |||||||| || || ||| | |||||| |||| || ||||| ||||| |||||||| ||||| |||||||||||| |||      |||||| |  | ||||    ||| ||        ||   |                                                                                                  
AAAGATCTGCTGAAGAAGCGGAGGATCACGGGGCTTTGCATTAAGAGCAAGCGATTTCAAGTTGGCAATCGGGACTGTCGCCTTATTGTCTATCCTCGAGgtatgtaactgt------ttatctctgctctacgacctgacgtgtttttgtaaaatgcag------------------------------------------------------------------------------------------------

upper sequence: AT2G25320.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ15334 (Selaginella moellendorffii), 5'ss of exon 1
AAGGATCTTCTAAAGAAGAGGAAGATAACAGGTCTTTGCATCAAAAGTAAGAGGTTTCAAATTGGGAACCGGGATTGTCGACTTATTGTTTATCCCCGAGgtatgtaagtgtactagattatctgttttatacggta-gacatggaaccaacaatctccttttcaatattctgtttttccttcctatgagctgtctgattgctgcatttgtagtgttgaatgtctgaactgatggtcttactcttaatggcctcag
|| ||||| || |||||| ||| ||| || || |||||||| || || ||| | |||||| |||| || ||||| ||||| |||||||| ||||| |||||||||||| |||      |||||| |  | ||||    ||| ||        ||   |                                                                                                  
AAAGATCTGCTGAAGAAGCGGAGGATCACGGGGCTTTGCATTAAGAGCAAGCGATTTCAAGTTGGCAATCGGGACTGTCGTCTTATTGTCTATCCTCGAGgtatgtaactgt------ttatctctgctctacgacctgacgtgtttttgtaaaatgcag------------------------------------------------------------------------------------------------