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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGACGAGCTCGTTCCTCCAAGTTTTCTCAGAGTTCCTCTAAGCCTTCGGTTATAATGGCTTTCTTCTCTTGCGTCGCTTGGCTCTACGTCGCTGGCAGgtacctttgcttcgtttttccccattgataatcgaatctccaatgactctagattagttcttagaattcgattttcaaatattctggtgtcgtaattgaacatttttcttgtgattag

Basic information

species Arabidopsis thaliana
transcript AT2G25300.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G25300.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA17G32180.1 (Glycine max), 5'ss of exon 1
---AACGACGAGCTCGTTCCTCCAAGTTTTCTCAGAGTTCCTCTAAGCCTTCGGTTATAATGGCTTTCTTCTCTTGCGTCGCTTGGCTCTACGTCGCTGGCAGgtacctttgcttcgtttttccccattgataatcgaatc--tccaatgactctagattagttcttag-----aattcgattttcaaatattctggtgtcgtaattga-----acatttttcttgtgattag-----------
   | ||| |||        || |||     |||||   |||| ||  | ||  |  | ||||| |||||||| |||||||| ||||||||||||||||| ||||||       |||||||  || | |     | | |||  || ||| | ||    ||  ||| |       ||  ||||| |    |    |     || ||  ||     || ||||| ||||  ||             
CGAAGCGAGGAGGAGCGAGATCGAAGCCCGTTCAGA---CCTCGAAATCGTCCCTCGTCATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCTGGAAGgtacgcgataatcgttttctccaaattgcttttggatccgtcgaataaatcgttgttgattcgtgattcgcaacgcgattctgctgttcgttttcaacgaaacggattttcactttttttttgttgttttggaattgttag

upper sequence: AT2G25300.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA14G14000.1 (Glycine max), 5'ss of exon 1
---AACGACGAGCTCGTTCCTCCAAGTTTTCTCAGAGTTCCTCTAAGCCTTCGGTTATAATGGCTTTCTTCTCTTGCGTCGCTTGGCTCTACGTCGCTGGCAGgtacctttgcttcgtttttccccattgataatcgaatctcca-atgactctagattagtt-----cttagaattcgatttt--caaatattctg---gtgtcgtaattgaacatttttcttg--tgattag----------
   | ||| |||        || |||     |||||   |||| ||  | ||  |  | ||||| |||||||| |||||||| |||||||||||||| || ||||||       |||||| |||  |||| |  | ||  |   | || | ||    ||  ||      ||  ||   |||| |        || ||   ||  || | ||| || ||||| |||  || || |          
CAAAGCGAGGAGGAGCGAGATCGAAGCCCGTTCAGA---CCTCGAAATCGTCTCTCGTTATGGCCTTCTTCTCCTGCGTCGCGTGGCTCTACGTCGCCGGAAGgtacggcgaaatcgtttctccgaattgcttttggatccgttagataagtcgttgttgatttgtgatttgcaacgggattctgctgttcgttttgaatgtaacggatttgcacgttttttttggttgttttggaattgttag

upper sequence: AT2G25300.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 1
---AACGACGAGCTCGTTCCTCCAAGTTTTCTCAGAGTTCCTCTAAGCCTTCGGTTATAATGGCTTTCTTCTCTTGCGTCGCTTGGCTCTACGTCGCTGGCAGgtacctttgcttcgtttttccccattgataatcgaatctccaatgactctagattagttcttagaattcgattttcaaatattctggtgtcgtaattgaacatttttcttgtgattag
    |  |||     |    ||||||  |  |||||   | || || || ||  | || ||||| |||||||| ||| ||||||||||||||||||| |||||||  ||   |||   | || ||    | |    |||||   | | | || |  | |  ||||    | || || |    | || | ||     ||||| |                  
ACGCATCACGCCGATGGAGATCCAAGCCTCTTCAGA---CTTCCAATCCCTCTCTCATCATGGCCTTCTTCTCCTGCCTCGCTTGGCTCTACGTCGCCGGCAGgtttctcctcttttctctttccttccgct----gaatcctaatttattcgatctcatctcttttt-tccgtttatgttgtttttttgttcgcaaattggaaggca-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828993|gb|CK118677.1|CK118677
EST:     GTTATAATGGCTTTCTTCTCTTGCGTCGCTTGGCTCTACGTCGCTGGCAG                         GTTATGGCAAGATGCAGAGAATAGAGTGGTACTCAATAATATACTTAAGAA
genomic: GTTATAATGGCTTTCTTCTCTTGCGTCGCTTGGCTCTACGTCGCTGGCAGgtacctttgc ... ttgtgattagGTTATGGCAAGATGCAGAGAATAGAGTGGTACTCAATAATATACTTAAGAA