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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTGAAGAGCTGGTTACACTTCAGACTTGTTCTAATCCTCCTAAGAAGCTGAAACCAGGGGACTATTGGTATGATAAAGTGTCTGGACTTTGGGGAAAGgtgaggaatatttactgttcttttgagttttgtgtcttagtttctattgtttcttatatatatatatatgatgttggggttctacag

Basic information

species Arabidopsis thaliana
transcript AT2G23460.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G23460.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA01G38890.1 (Glycine max), 5'ss of exon 3
CCCTGAAGAGCTGGTTACACTTCAGACTTGTTCTAATCCTCCTAAGAAGCTGAAACCAGGGGACTATTGGTATGATAAAGTGTCTGGACTTTGGGGAAAGgtgaggaatatttactgttcttttgagttttgtg---tcttagtttctattgtttcttatatatatatatatgatgttggggttctacag
   ||| ||  |||||||  | ||||  ||  | || ||||| ||||||||||| |||||  ||||||||||||||||||| ||||| |||||||| |||||    | |  | | ||   || ||| || | ||   | | | |||  | ||||  |  ||    |    ||    ||  | ||  ||||
TTATGAGGAATTGGTTACGTTGCAGAACTGCCCCAACCCTCCGAAGAAGCTGAAGCCAGGAAACTATTGGTATGATAAAGTATCTGGCCTTTGGGGGAAGgtattcatt--taaatgcatttgtgatttgtatggtttttgaattttgagtgttattactacggttgctgattggtttatgatttcacag

upper sequence: AT2G23460.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA11G06410.1 (Glycine max), 5'ss of exon 3
CCCTGAAGAGCTGGTTACACTTCAGACTTGTTCTAATCCTCCTAAGAAGCTGAAACCAGGGGACTATTGGTATGATAAAGTGTCTGGACTTTGGGGAAAGgtg---aggaatatttactgttcttttgagtt---ttgtgtcttagtttctattgt-ttcttatatatatatatatgatgttggggttctacag
   ||| ||  |||| ||  | |||| |||  | || ||||| ||||||||||| ||||||  |||||||||||||||||| ||||| |||||||| |||||        | ||  | |  |  ||||  ||   | |||| | ||||| |  ||| ||  ||   ||    || || | |   | ||  ||||
TTATGAGGAATTGGTAACTTTGCAGAATTGCCCCAACCCTCCCAAGAAGCTGAAGCCAGGGACCTATTGGTATGATAAAGTATCTGGTCTTTGGGGGAAGgtatttgtttacatgcatttgtgatttggtttgtatggtgtttgagttttttgtgtgttactacggatgctgat-tggtttaatgatttcacag

upper sequence: AT2G23460.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA16G25990.1 (Glycine max), 5'ss of exon 3
CCCTGAAGAGCTGGTTACACTTCAGACTTGTTCTAATCCTCCTAAGAAGCTGAAACCAGGGGACTATTGGTATGATAAAGTGTCTGGACTTTGGGGAAAGgtgaggaatatttactgttcttttgagttttgtgtcttagtttctattgt-ttcttatatatatatatatgatgttggggttctacag------------------------------------------------------------------------------------------------------------------
   ||| || || || ||  | |||| |||| |||||||||| |||||  ||||||| ||| |||||||||||||||| || |||||  ||||||| |||||     || |||| | || |||| | | ||   ||   || |   | || || |||  |||  || |   |  || |  | |   |                                                                                                                   
TTTTGAGGAACTTGTCACGTTGCAGAGTTGTGCTAATCCTCCCAAGAATTTGAAACCCGGGAACTATTGGTATGATAAGGTCTCTGGGTTTTGGGGGAAGgt-----atgtttaattttttttttattctttaatccgcgtgttagtagtattgttagttattgatgtggaagattcgaatccctaatctctcctctcccacttccctccaccactagtatttttgggaggtaatggttttttttttgtcttggatttttgagttttatctcattgtttgtttgtttgtgtggattttgcag

upper sequence: AT2G23460.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA02G06910.1 (Glycine max), 5'ss of exon 3
CCCTGAAGAGCTGGTTACACTTCAGACTTGTTCTAATCCTCCTAAGAAGCTGAAACCAGGGGACTATTGGTATGATAAAGTGTCTGGACTTTGGGGAAAGgtgaggaatatttactgttcttttgagt---tttgtgtc-ttagtttctattgtttcttat-atatatatatatgatgttgg-ggttctacag------------------------------------------
   ||| || || || ||  | ||||  ||| |||||||||| |||||  |||| || ||| ||||||||||||||||||| |||||  ||||||| ||||| | |  |||||  | |  || | |||   || || |  ||||||  | ||  || || | |     | ||  ||  |       ||| |                                            
TTTTGAGGAACTTGTCACGTTGCAGAGCTGTGCTAATCCTCCCAAGAATTTGAAGCCCGGGAACTATTGGTATGATAAAGTCTCTGGGTTTTGGGGGAAGgt-atgtttatttgttttatttgttagtaacttagtattgttagttattgttagtttttgttagggggagattcgaactcaccacctcttcctcattcttttcccctttcaccattagtattgtgaattttgcag

upper sequence: AT2G23460.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv07s0255g00100.t01 (Vitis vinifera), 5'ss of exon 2
CCCTGAAGAGCTGGTTACACTTCAGACTTGTTCTAATCCTCCTAAGAAGCTGAAACCAGGGGACTATTGGTATGATAAAGTGTCTGGACTTTGGGGAAAGgtgag---gaatatttactgttcttttgagttttgtgtcttagtttcta-ttgtttcttatatatatatatatgatgttggggttctacag
 |  || |||||||||  | | ||||  ||  | || || || |||||  | || |||||  | ||||||||||||||||| ||||| ||||||||||||||||    || ||  | | |   |||||  | | || | ||  ||  || ||||||   ||  |  |  ||      |     || |||||
TCAAGAGGAGCTGGTTTTATTACAGAACTGCCCAAACCCACCAAAGAAATTAAAGCCAGGAAATTATTGGTATGATAAAGTATCTGGCCTTTGGGGAAAGgtgaatgtgattaccttcagacattttgt-tctggtattttgtttcataattgttttgaatggaacttgatgcttgttctaaattttacag