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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGACGATGCTGCAACGAGCTGCGAGTAATGCGTATTCATGGTGGTGGGCGAGTCATATTCGAACCAAACAATCTAAATGGCTCGAACAAAACCTTCAAGgtctctccttttgaatccatgtctctttatataggtgtttgtttctaaaaagttgagatctttgaggtttgatctattttttgttttggatatgaatttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G22560.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G22560.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os01g74510.1 (Oryza sativa), 5'ss of exon 1
ACGACGATGCTGCAACGAGCTGCGAGTAATGCGTATTCATGGTGGTGGGCGAGTCATATTCGAACCAAACAATCTAAATGGCTCGAACAAAACCTTCAAGgt--ctctcc--ttttgaatccatgtctctttatataggtgtttgtttctaaaaagttgagatctttgaggtttgatctattttttgttttggatatgaatttgtag
   | ||||||||| || || ||||| |||||||||||||||||||||||||| || || || ||||| || || |||||||| ||     | || ||||||  |  |||  | |  ||||    ||| |||    |  | |||| ||      ||||  |    |     | ||    |||| ||| ||||    | |||      
GGCAGGATGCTGCAGCGGGCGGCGAGCAATGCGTATTCATGGTGGTGGGCGAGCCACATCCGCACCAAGCAGTCCAAATGGCTTGATAGCCATCTCCAAGgtgaccgtccaatatataatcttgatcttttttatcatatatttgatttctgtgagttatgtatgtacttatatgggagatttgttggtttgt---tcaatcc----

upper sequence: AT2G22560.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G062587_T01 (Zea mays), 5'ss of exon 1
ACGACGATGCTGCAACGAGCTGCGAGTAATGCGTATTCATGGTGGTGGGCGAGTCATATTCGAACCAAACAATCTAAATGGCTCGAACAAAACCTTCAAGgtctc-------tccttttgaatccatgtctctttatataggtgtttgtttctaaaaagttgagatctttgaggtttgatctattttttgttttggatatgaatttgtag
   | ||||||||| || || ||||| ||||| ||||||||||||||||| || || || || |||||||| || |||||||||||  |  |||| |||||| |        || | ||  ||| |  |   |  ||   | | ||  ||||  |  |  | ||    |   |  |   |||    ||  ||    |  ||         
GAAAGGATGCTGCAGCGGGCAGCGAGCAATGCATATTCATGGTGGTGGGCAAGCCACATCCGCACCAAACAGTCAAAATGGCTCGACAACCACCTCCAAGgtatttgtttcatcttgtttgatcaaccttgttgcatgatgattttcatttcacagtaaattag----taatgcatctgtctgcccttcattccttacctgtcc------

upper sequence: AT2G22560.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G438704_T01 (Zea mays), 5'ss of exon 1
ACGACGATGCTGCAACGAGCTGCGAGTAATGCGTATTCATGGTGGTGGGCGAGTCATATTCGAACCAAACAATCTAAATGGCTCGAACAAAACCTTCAAGgtctctccttttgaatccatgtctctttatata-ggtgtttgtttctaaaaagttgagatctttgaggtttgatctattttttgttttggatatgaatttgtag
     ||||||||| || || ||||| ||||| ||||||||||||||||| || || || || | |||||| || |||||||||||  |  |||| ||||||      |  |  || ||||  | || || |  | ||| || |||       ||||  ||   |                                       
GAAGAGATGCTGCAGCGGGCAGCGAGCAATGCATATTCATGGTGGTGGGCAAGCCACATCCGCAGCAAACAGTCAAAATGGCTCGACAACCACCTCCAAGgtaatgaatgattcatgcatgatttttaatgtgcgctgtgtgattc---gtccttgaattcgcag---------------------------------------

upper sequence: AT2G22560.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA18G29480.1 (Glycine max), 5'ss of exon 1
ACGACGATGCTGCAACGAGCTGCGAGTAATGCGTATTCATGGTGGTGGGCGAGTCATATTCGAACCAAACAATCTAAATGGCTCGAACAAAACCTTCAAGgtct-ctccttttgaatccatgtctctttatataggtgtttgtttctaaaa-agttgagatctttgaggtt--tgatctattttttgttttggatatgaatttgtag
      ||| | ||  ||  ||| || ||||| ||||||||||||||||| || |||||  |||| || ||||| |||||| | ||||||||||| |||||||  ||  ||   |       |   || | | | | | | | |  |     | || |  | |   |  ||  |||| ||  ||   | || ||| |||        
------ATGTTACAGAGAATTGCAAGCAATGCATATTCATGGTGGTGGGCTAGCCATATCAGAACAAAGCAATCAAAATGGATGGAACAAAACCTCCAAGgtcagctttttcccatcttgcttgcattcaaacaaggggtggatattgttttaattcaactttccaaaattcatgatttaacttaattgtttgatttgat-------

upper sequence: AT2G22560.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA09G33200.1 (Glycine max), 5'ss of exon 1
ACGACGATGCTGCAACGAGCTGCGAGTAATGCGTATTCATGGTGGTGGGCGAGTCATATTCGAACCAAACAATCTAAATGGCTCGAACAAAACCTTCAAGgtctctccttttgaatccatgtctctttatataggtgtttgtttctaaaaagttgagatctttgaggtttgatctattttttgttttggatatgaatttgtag---
      ||| ||||  |||||||||| ||||| ||||||||||||||||  || || ||  |||| || ||||| |||||| | || ||||||||||||||| |   |      |||  | | |||| || |   | ||  | |  || ||  |||     || |   || ||||  ||||    | | || |   |    |    
------ATGTTGCAGAGAGCTGCGAGCAATGCTTATTCATGGTGGTGGGTTAGCCACATCAGAACAAAGCAATCAAAATGGATGGAGCAAAACCTTCAAGgtatgatc------atcagtttatcttcattttctttttcatattgaagaacatgatcaactttaccatttatctccttttctgatggaatttttttacacattca

upper sequence: AT2G22560.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA01G02810.1 (Glycine max), 5'ss of exon 1
ACGACGATGCTGCAACGAGCTGCGAGTAATGCGTATTCATGGTGGTGGGCGAGTCATATTCGAACCAAACAATCTAAATGGCTCGAACAAAACCTTCAAGgtctctccttttgaatccatgtctctttatataggtgtttgtttctaaaaagttga-gatc--tttgaggtttgatctattttttgttttgga-tatgaatttgtag-
 | |  ||| ||||  |||| ||||| ||||| ||||||||||||||||  || || ||  |||| |||||||| |||||| | || |||||||||| ||||            ||| || | |||| || |   | ||  | || || ||  ||| ||||   |  |   || ||||  ||||| |  |||| | |   ||||||  
CCAAATATGTTGCAGAGAGCGGCGAGCAATGCTTATTCATGGTGGTGGGTTAGCCACATCAGAACAAAACAATCAAAATGGATGGAGCAAAACCTTCTAGgtgatc--------atcaatttatcttcattttctttttcatatcaaagaacatgatgatcaactctaccatttatctcctttttctggtggaatttttttttgtaca

upper sequence: AT2G22560.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv00s0483g00050.t01 (Vitis vinifera), 5'ss of exon 1
ACGACGATGCTGCAACGAGCTGCGAGTAATGCGTATTCATGGTGGTGGGCGAGTCATATTCGAACCAAACAATCTAAATGGCTCGAACAAAACCTTCAAGgt-ctctccttttgaatccatgtctctttatataggtgtttgtttctaaaaagttgagatctttgaggtttgatctattttttgttttggatatgaatttgtag
      ||| | ||| |||| || || ||||| ||||||||||||||||| || || ||| |||| || |||||||||||||| |||||| | ||||||||| || | ||| |  | | |   ||     | |   ||  | |     ||||    | ||  |  | | ||||   ||   || || |||| ||  || |  | 
------ATGTTACAAAGAGCAGCAAGCAATGCATATTCATGGTGGTGGGCAAGCCACATTAGAACAAAGCAATCTAAATGGCTTGAACAACATCTTCAAGgtacttttcttcttcaactacaacttggggtttcaatgcatttcctccaaaac---acattgtataagcttgaaacataaatttttgtgga-attcatatccaa