1 5' 3' |
GAGAACTCAGATCGAAGATTTTCTAGACATTTTCATCTCTATCAAGGACGAAGCTGGCCAGCCTTTGCTTACCGCTGATGAAATCAAACCAACCATTAAGgtacatagctttttaatatacttttcatatgttacatttatacatatttaaaaaattaaaccaactgttacgttcgatatataataatatatgacatagt...
species | Arabidopsis thaliana |
transcript | AT2G22330.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAGCTGGCCAGCCTTTGCTTACCGCTGATGAAATCAAACCAACCATTAAG GAACTTGTAATGGCGGCGCCAGACAACCCATCAAACGCCGTGGAATGGGCCEST: gi|124941273|gb|EL017645.1|EL017645
genomic: AAGCTGGCCAGCCTTTGCTTACCGCTGATGAAATCAAACCAACCATTAAGgtacatagct ... aattttatagGAACTTGTAATGGCGGCGCCAGACAACCCATCAAACGCCGTGGAATGGGCC
EST: GCTGATGAAATCAAACCAACCATTAAG GAACTTGGTAATGGCGGCGCCAGACAACCCATCAAACGCCGTGGAATGGGCEST: gi|124714727|gb|EH806129.1|EH806129
genomic: GCTGATGAAATCAAACCAACCATTAAGgtacatagct ... aattttatagGAACTT-GTAATGGCGGCGCCAGACAACCCATCAAACGCCGTGGAATGGGC
EST: AAGCTGGCCAGCCTTTGCTTACCGCTGATGAAATCAAACCAACCATTAAG GAACTTGTAATGGCGGCGCCAGACAACEST: gi|124789407|gb|EH879086.1|EH879086
genomic: AAGCTGGCCAGCCTTTGCTTACCGCTGATGAAATCAAACCAACCATTAAGgtacatagct ... aattttatagGAACTTGTAATGGCGGCGCCAGACAAC
EST: AAGCTGGCCAGCCTTTGCTTACCGCTGATGAAATCAAACCAACCATTAAG GAACTTGTAATGGCGGCGCCGGACAACCC
genomic: AAGCTGGCCAGCCTTTGCTTACCGCTGATGAAATCAAACCAACCATTAAGgtacatagct ... aattttatagGAACTTGTAATGGCGGCGCCAGACAACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAACTCAGATCGAAGATTTTCTAGACATTTTCATCTCTATCAAGGACGAAGCTGGCCAGCCTTTGCTTACCGCTGATGAAATCAAACCAACCATTAAGgtacatagctttttaatatacttttcatatgttacatttatacatatttaaaaaattaaaccaactgttacgttcgatatataataatatatgacatagt
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccaac